Macrocyclization of bis-indole quinolines for selective stabilization of G-quadruplex DNA structures

The recognition of G-quadruplex (G4) DNA structures as important regulatory elements in biological mechanisms, and the connection between G4s and the evolvement of different diseases, has sparked interest in developing small organic molecules targeting G4s. However, such compounds often lack drug-like properties and selectivity. Here, we describe the design and synthesis of a novel class of macrocyclic bis-indole quinolines based on their non-macrocyclic lead compounds. The effects of the macrocyclization on the ability to interact with G4 DNA structures were investigated using biophysical assays and molecular dynamic simulations. Overall, this revealed compounds with potent abilities to interact with and stabilize G4 structures and a clear selectivity for both G4 DNA over dsDNA and for parallel/hybrid G4 topologies, which could be attributed to the macrocyclic structure. Moreover, we obtained knowledge about the structure–activity relationship of importance for the macrocyclic design and how structural modifications could be made to construct improved macrocyclic compounds. Thus, the macrocyclization of G4 ligands can serve as a basis for the optimization of research tools to study G4 biology and potential therapeutics targeting G4-related diseases.

Macrocyclization improves the selectivity, affinity, and ability to stabilize G4 DNA structures.     

Synthesis and antispasmodic activity evaluation of bis-(papaverine) analogues

A new series of N-substituted bis-(tetrahydropapaverine) ring systems have been synthesised in expectation of better antispasmodic activity in comparison with papaverine. The synthesis of the targeted heterocycles is described along with a discussion of their structure activity relationship. The general synthetic methods of bis-(tetrahydropapaverine) analogues involve tetrahydropapaverine, various piperazines, diisocyanates and diisothiocyanates as starting materials. Pharmacological evaluation involves the in vitro antispasmodic activity on a freshly removed guinea pig ileum using a force displacement transducer amplifier connected to a physiograph. Among the analogues synthesized in the present study, N,N'-bis-[2-carbamoyl-1-(3,4-dimethoxybenzyl)-6,7-dimethoxy-1,2,3,4-tetrahydroisoquinolinyl]piperazine (22), was found to be the most potent muscle relaxant (IC(50): 0.31 microM).     

A new route to obtain shape-controlled gold nanoparticles from Au(III)-beta-diketonates

Ligands with a beta-diketone skeleton have been employed for the first time as reductant to produce ligand stabilized gold nanoparticles of different shapes from aqueous HAuCl(4) solution. Evolution of stable gold nanoparticles follows first order (k approximately equal to 10(-2) min(-1)) kinetics with respect to Au(0) concentration. Growth of particles of different shapes (spherical or triangular or hexagonal) goes hand in hand under the influence of different beta-diketones, which have excellent capping and reducing properties. Chlorine insertion was observed to take place in the beta-diketone skeleton.     

Role of dimethyl sulfoxide as a solvent for vinyl polymerization

Dimethyl sulfoxide has been used as a solvent in the polymerization of methyl methacrylate and styrene. The chain-transfer coefficients of the solvent and the values of δ [i.e., (2k_t)^1/2/k_p] in solvent-monomer mixtures of various compositions were determined. δ was observed to be dependent on the solvent concentration in the case of methyl methacrylate but remained constant in case of styrene. The lowering of the values of δ with increasing solvent concentration in case of methyl methacrylate has been attributed to an interaction between the solvent and poly(methyl methacrylate) radical resulting in lower termination rate.     

Physico-chemical properties of the sodium salts of some fatty acids in formamide solution in the temperature range 15–45°C

The thermal stability of some boracites, CuB₇O₁₃Cl, NiB₇O₁₃Br and FeB₇O₁₃I, was investigated using thermogravimetry in air up to 1000°, DTA in air to 1200° and evolved gas analysis in vacuum to 1200°C. Only the FeI compound showed weight loss below 1000°C. The endothermic peaks associated with melting were CuCl (1025°C), NiBr (1150°C) and FeI) (965°C). Evolved gas analysis indicated major differences in the decomposition products of the three materials.     

Separation of enzymes from Candida boidinii crude extract by continuous flow zone electrophoresis.

Separation of the enzymes formate dehydrogenase, formaldehyde dehydrogenase and methanol oxidase from Candida boidinii crude extract has been explored using continuous flow zone electrophoresis in the VaP-22 and the scaled-up VaP-220 electrophoresis apparatus. Yields up to 95% and purification factors between 3 and 7 were obtained, together with separation of cell debris from the enzymes. Multiple injections of sample were used to obtain a protein throughput of 46.2 mg/h in the VaP-22. A tenfold higher throughput was achieved using the VaP-220. Correlation of the electrophoretic mobility in continuous flow zone electrophoresis with the elution behavior in ion-exchange chromatography confirmed the primary role of net surface charge in the separation of biological molecules. Proteins and enzymes with differences greater than 0.05 M elution molarities in ion-exchange chromatography can be separated. This corresponds to a preparative scale (mg/h or g/h) separation of proteins and enzymes whose difference in apparent electrophoretic mobility is greater than 0.70 x 10(-5) cm2/(V.s).     

Photopolymerization of methyl methacrylate with the use of bromine as photoinitiator

Low concentrations of bromine (0.008–0.06M) were used to initiate photopolymerization of MMA in bulk and in diluted (near bulk) systems, the diluents or solvents used being benzene, toluene, dioxane, tetrahydrofuran, carbon tetrachloride, chloroform, methylene chloride, and methanol. Polymerization in bulk follows usual free-radical kinetics. Inert solvents (benzene, toluene) as well as the other solvents used enhance the rate of polymerization MMA even when used in the range of catalytic concentrations (0.04–0.4M). An initiation mechanism involving solvent molecules appears to be predominant in diluted systems.     

Anomalous behavior of the Nd1.84Ce0.16CuO4 superconductor

The as-prepared electron-doped system Nd_2–xCe_xCuO₄ (where x0.16) is not superconducting. It becomes superconducting only after removal of a minuscule amount of extraneous oxygen (0.02 of O per unit formula). Mössbauer effect studies were carried out for oxygenated and deoxygenated Nd_2–xCe_xCu(⁵⁷Co)O₄ with x=0.14, 0.16, and 0.18. The spectra show evidence of oxygen anions attaching to the probe⁵⁷Co in apical positions, to form 5- and 6-coordinated species. A conventional procedure for deoxygenation brings about little change in the Mössbauer spectra both above and below the optimal superconducting concentration; however, for x=0.16, a dramatic change is observed—a major fraction of the magnetically split five-coordinated species manifests itself as a paramagnetically relaxed doublet upon deoxygenation, which costitutes a microscopic measure of the superconducting volume fraction. This apparently anomalous behavior at x0.16, where the extraneous oxygen is more readily desorbed, may be related to an electronic and/or local structural change in the CuO₂ plane.     

NS and NSO-Donor ligands and their metal complexes. Synthesis and characterisation of a new low-spin iron(III) complex with 1,2-di(o-aminophenylthio)ethane and iron(III), cobalt(III) and manganese(III) complexes of 1,2-di(o-salicylaldiminophenylthio)ethane

Summary Iron(III) complexes of a quadridentate N₂S₂ donor ligand, 1,2-di(o-aminophenylthio)ethane (DAPTE) and its Schiff Base with salicylaldehyde, a hexadentate N₂S₂O₂ donor ligand,viz. 1,2-di(o-salicylaldiminophenylthio)ethane (H₂DSALPTE) have been synthesised and characterised.The Schiff base ligand (1 mol) gave a dark green tri-iron(III) [Fe₃(DSALPTE)(HDSALPTE)Cl₃]Cl₂ complex when reacted with anhydrous iron(III) chloride (1 mol). The Mössbauer data of this complex suggest the presence of three iron sites, one of which is octahedral and the other two tetrahedral. On the other hand, Fe(ClO₄)₃ reacted smoothly with H₂DSALPTE in ethanol to give a mononuclear pseudo-octahedral complex in which the ligand functions in a dibasic hexadentate fashion. Mössbauer data suggest the presence of a low-spin-high-spin equilibrium in the solid state. The manganese(III) and cobalt(III) complexes of the Schiff base, H₂DSALPTE, are also studied for the sake of comparison with the corresponding iron(III) complex. The N₂S₂ ligand, however, formed a low-spin pseudo-octahedral iron(III) complex. The complexes have been characterised by elemental analysis, molar conductance values, cryomagnetic data and i.r., electronic and Mössbauer spectral data.     

Thermodynamics of silver—silver halide electrodes and thermodynamic solubility products of silver halides in glycerol + water mixtures at different temperatures

The standard potentials of silver—silver bromide and silver—silver iodide electrodes in glycerol+water mixtures containing 5, 10, 20 and 30 wt% glycerol were determined from electromotive force measurements of the cell Ag(s), AgX(s), KX(c)//KCl(c), AgCl(s), Ag(s), where X is Br or I, at seven different temperatures in the range 5–35°C. The standard potentials in each solvent are represented as a function of temperature. The standard thermodynamic functions for the electrode reactions, the primary medium effects of various solvents upon X⁻, and the standard thermodynamic quantities for the transfer of 1 g-ion of X⁻ from water to the respective glycerol + water media are evaluated and discussed in the light of ion—solvent interactions as well as the structural changes of the solvents. From the values of the Ag/Ag⁺ and Ag/AgX, X⁻ electrodes, the thermodynamic solubility product constants of silver chloride, silver bromide and silver iodide have been determined in glycerol + water solvent mixtures at different temperatures.