THE INTERACTION OF 8-AZIDOETHIDIUM AND tRNA

Abstract Optical spectroscopy and proton nuclear magnetic resonance spectroscopy have been used to investigate the non-covalent and covalent binding of 8-azidoethidium (8-azido-3-amino-5-ethyl-6-phe-nyl-phenanthridium) with transfer RNA (tRNA) molecules. The nuclear magnetic resonance measurements demonstrate that ethidium and ethidium monoazide bind to the same unique binding site on tRNA molecules. However, the optical studies demonstrate that the photochemical reaction between ethidium monoazide and tRNA generates at least three different photoproducts. One of the covalent photoproducts has fluorescence properties which mimic those of intercalated, non-covalently bound ethidium, but it is produced only in about 10% yield. The major photoproduct(s) is(are) virtually non-fluorescent. The ethidium monoazide photochemistry with tRNA molecules is obviously complex and this may complicate its use as a photolabel of polynucleotides.     

The swelling interface number as a criterion for prediction of diffusional solute release mechanisms in swellable polymers

When a glassy polymer containing a uniformly dispersed solute is brought in contact with a penetrant, solute diffusion will be associated with the transport mechanism and penetration velocity of the penetrant in the polymer. Analysis and prediction of mechanisms of diffusional solute release may be obtained through a new dimensionless number, the swelling interface number, Sw, which compares the relative mobilities of the penetrant and the solute in the presence of macromolecular relaxations in the polymer. It is shown that a sufficient and necessary criterion for time-independent diffusional solute release rates from these swellable systems is that the Sw be smaller than 10^?2. The swelling interface number Sw may be related to easily determined structural and thermodynamic parameters of the solute/polymer/penetrant system. Preliminary experimental results of dynamic water swelling of poly(2-hydroxyethyl methacrylate-co-methyl methacrylate) and diffusional release of theophylline from initially glassy copolymers show that decreasing values of Sw are related to increased pseudo-case-II transport kinetics of the solute.     

Oxidation Products of Retinylidene Dimedone

Several oxidation products of the retinoid retinylidene dimedone (RD) have been synthesized and characterized for biological testing in the expectation that they may be found as metabolites of RD.     

Scanning tunneling microscopy and surface simulation of zinc-blende GaN(001) intrinsic 4x reconstruction: linear gallium tetramers?

Scanning tunneling microscopy images confirm electron diffraction studies that the zinc-blende GaN(001)-4x reconstruction consists of rows aligned along [110] with a spacing along [110] of 4a. Dual-bias imaging shows a 180 degree shift of the corrugation maximum position between the profiles of empty and occupied states, in agreement with surface simulations based on the 4 x 1 linear tetramer model of Neugebauer et al. [Phys. Rev. Lett. 80, 3097 (1998)]. Electronic structure calculations predict a surface band gap of 1.1 eV, close to the measured value of 1.14 eV and the previously predicted value (1.2 eV). Despite the successes of this model, high-resolution images reveal an unexpected 3x periodicity (not seen in diffraction) along the [110] row direction, indicating the need for a 4 x 3 model, and putting into question the existence of linear Ga tetramers.     

Tetrabromobutatriene: completing the perhalocumulene series

[structure: see text] Tetrabromobutatriene, C(4)Br(4), can be prepared directly from dibromobutadiyne by reaction with Br(2) at -25 degrees C in concentrated hexanes solution. The cumulene precipitates out of the reaction mixture as a yellow powder. Under palladium-catalyzed coupling conditions, C(4)Br(4) can undergo allylic rearrangement, giving a mixture of products, including some with butenyne backbones. However, in furan solution, C(4)Br(4) reacts cleanly at its central double bond to give the furan Diels-Alder adduct. Under Suzuki conditions, this adduct reacts at the furan double bond rather than at bromide.     

Use of an internal control for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of bacteria

A method to aid in the analysis of bacterial samples of unknown concentration by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry is demonstrated. It is shown that in MALDI analysis of bacteria, the intensities of resulting peaks in spectra are sensitive to the microbial concentration. At the high and low ends of the concentration range, no signal can be obtained, leaving very concentrated or very dilute samples indistinguishable. The addition of cytochrome c as an internal control allows the differentiation of these concentrated and dilute samples. The presence of the internal control causes only a 20% to 30% decrease in signal intensity when the bacterial concentration is optimum. However, the signal quality is improved when the internal control is added to some low concentrations of bacteria.     

Middle School Students' Conceptual Learning from the Implementation of a New NSF Supported Curriculum: Interactions in Physical Science™

A new National Science Foundation supported curriculum, Interactions in Physical Science?, was evaluated on students’ conceptual change in the twelve concept areas of the national physical science content standard (B) for grades 5–8. Eighth grade students (N=66) were evaluated pre and post on a 31‐item multiple‐choice test of conceptual understanding developed by the Harvard ‐Smithsonian Center for Astrophysics. Significant student gains (p<. 05, t‐test, two‐tailed) occurred in all concept areas in the category of properties and changes in properties of matter; for the force concept areas in the category motions and forces; and for the heat transfer and light interactions areas in the category of transfer of energy. Two of the six concept areas in the category of transfer of energy, chemical and nuclear reactions and the sun as a major source of energy, were not addressed in this study. Significant learning gains as item percent correct were typically close to 20%, though effect sizes were small to medium in magnitude (d = 0.3–0.6). Implications of the study for conceptual change curriculum and teaching are discussed.     

A Weighting Function for Pre-emptive Multicriteria Assignment Problems

This paper presents a weighting function for aggregating pre-emptive criteria into a representative composite in multicriteria assignment problems. The result is based on taking advantage of the bipartite graph structure of such problems. An application is presented which involves assigning faculty and personnel to parking lots at a large university.     

Coordinating Theories of Learning to Account for Second-Grade Children's Arithmetical Understandings

This article coordinates social constructivism and socioculturalism orientations to explain 2nd-grade children's reasoning with 2-digit quantities. From a social constructivist position, we illustrate how the classroom teacher and the students constituted what counted as an acceptable mathematical explanation. As children offered informal and conventional ways of interpreting problem situations, they were expected to reason with quantities in sensible ways. From a sociocultural position, we explain how the teacher's and students' contributions were situated within the mathematical ways of knowing constituted by the community at large. Particular children's contributions were clarified in terms of the ways in which they participated in socially organized activities. By coordinating these lenses, we argue the local classroom mathematical practices constrained and enabled the mathematical practices of the wider society.