Simulation of DNA electrophoresis through microstructures

The dependence of the mobility of DNA molecules through an hexagonal array of micropillars on their length and the applied electric field was investigated and it was found that mobility is a nonmonotonic function of their length. Results also revealed that the size dependence of the DNA mobility depends on the applied electric field and there is a crossover around E approximately 25 V/cm for the mobility of lambda-DNA and T4-DNA. These observations are explained in terms of the diffusion process inside the structure affected by the solvent and are modeled using the Langevin and its corresponding Fokker-Planck equations. The phenomenon is generalized under three regimes in a phase diagram relating the electric field and the DNA lengths. The model and the associated phase diagram described here provide an explanation for the conflicting results reported by previous authors (Han et al. on the one hand, and Duong et al. and Inatomi et al. on the other) about the dependence of mobility on the DNA size in lattices near or below the radius of gyration.     

Excited-state double proton transfer in 1-azacarbazole hydrogen-bonded dimers

1-azacarbazole hydrogen-bonded dimers undergo photoinduced double proton transfer reaction in their lowest excited singlet state. A second emission band with a maximum at 510 nm arises from a tautomer formed in the excited singlet state as a result of the double proton transfer process.     

Synthesis of Silver Nanoparticles from Extracts of Wild Ginger (Zingiber zerumbet) with Antibacterial Activity against Selective Multidrug Resistant Oral Bacteria

Antibiotic resistance rate is rising worldwide. Silver nanoparticles (AgNPs) are potent for fighting antimicrobial resistance (AMR), independently or synergistically. The purpose of this study was to prepare AgNPs using wild ginger extracts and to evaluate the antibacterial efficacy of these AgNPs against multidrug-resistant (MDR) Staphylococcus aureus, Streptococcus mutans, and Enterococcus faecalis. AgNPs were synthesized using wild ginger extracts at room temperature through different parameters for optimization, i.e., pH and variable molar concentration. Synthesis of AgNPs was confirmed by UV/visible spectroscopy and further characterized by scanning electron microscopy (SEM), X-ray diffraction (XRD), energy-dispersive X-ray spectroscopy analysis (EDXA), and Fourier-transform infrared spectroscopy (FTIR). Disc and agar well diffusion techniques were utilized to determine the in vitro antibacterial activity of plant extracts and AgNPs. The surface plasmon resonance peaks in absorption spectra for silver suspension showed the absorption maxima in the range of 400–420 nm. Functional biomolecules such as N–H, C–H, O–H, C–O, and C–O–C were present in Zingiber zerumbet (Z. zerumbet) (aqueous and organic extracts) responsible for the AgNP formation characterized by FTIR. The crystalline structure of ZZAE-AgCl-NPs and ZZEE-AgCl-NPs was displayed in the XRD analysis. SEM analysis revealed the surface morphology. The EDXA analysis also confirmed the element of silver. It was revealed that AgNPs were seemingly spherical in morphology. The biosynthesized AgNPs exhibited complete antibacterial activity against the tested MDR bacterial strains. This study indicates that AgNPs of wild ginger extracts exhibit potent antibacterial activity against MDR bacterial strains.     

An enzymatic flow analysis method for the determination of phosphatidylcholine in sediment pore waters and extracts

A sensitive and selective flow injection method for the determination of phosphatidylcholine (PC) in sediment pore waters and extracts is described. It involves the use of phospholipase C, alkaline phosphatase and choline oxidase co-immobilized on controlled pore glass in a packed column reactor. The final product of the enzymatic reaction of phosphatidylcholine is hydrogen peroxide, and this is detected by measuring the chemiluminescence emission resulting from cobalt(II) catalysed reaction with luminol. The flow injection method is rapid (30 injections/h), reproducible (1.4% R.S.D. at 3 μM PC, n = 10) with a detection limit of 0.14 μM (estimated from 3σ_n−1 of the measured blank). A linear calibration response was obtained over a concentration range of 0.5-9 μM (r = 0.999). The method has been applied to the determination of phosphatidylcholine in sediment extracts and sediment pore waters.     

Design and numerical analysis of a photonic crystal fiber (PCF)-based flattened dispersion THz waveguide

Optical Review - We present the modeling of a porous core dispersion flatten photonic crystal fiber (PCF) for the fruitful transmission of THz signals. The model comprises only rectangular holes in...     

Immobilization of nickel ions onto the magnetic nanocomposite based on cross‐linked melamine groups: Effective heterogeneous catalyst for N‐Arylation of Arylboronic acids

A new magnetic heterogeneous catalyst was synthesized by immobilization of nickel ions onto a cross‐linked polymeric nanocomposite composed of cyanuric chloride, ethylenediamine and functionalized magnetic nanoparticles. The resulting nitrogen rich support was capable of adsorbing large amounts of nickel ions (1.20 mmol g^?1). The synthesized catalyst was characterized using AAS, TEM, FT‐IR, EDX, TGA, SEM, BET and XRD techniques. The performance of the prepared catalyst was investigated in the C‐N coupling of arylamines with aryl boronic acids. The reaction was carried out under a mild condition and good to moderate to good yields of products was obtained using only 5.0 mol% of the catalyst. The catalyst was easily recovered and reused for at least 7 times without any significant loss of its activity.     

Determination of caffeine in black tea leaves by Fourier transform infrared spectrometry using multiple linear regression

A simple and fast analytical procedure was developed for the determination of caffeine in black tea leaves. The method is based on multiple linear regression treatment of Fourier transform infrared spectrometric data obtained in the wave number range 1800–1300 cm⁻¹ after extraction of caffeine in CHCl₃ from tea samples, wetted with an aqueous solution of NH₃ (0.1 M). The procedure requires no complex sample preparation. It provided a limit of detection of 0.035 mg/ml, a sampling frequency of 6 h⁻¹ and a coefficient of variation of 0.8% for five independent measurements of a tea sample with 3.68% w/w caffeine content. This procedure provides a drastic reduction in the consuming organic solvent for each sample compare to that of the reference chromatographic determination. The accuracy of technique is evaluated by comparing the obtained results with those of a reference HPLC technique. An average value of 3.60±0.07% w/w was obtained by HPLC for a powdered tea sample which is compromising when is compared to 3.68±0.03% (w/w) obtained by this FTIR technique.     

Disposable electrochemical flow cells for catalytic adsorptive stripping voltammetry (CAdSV) at a bismuth film electrode (BiFE)

Catalytic adsorptive stripping voltammetry (CAdSV) has been demonstrated at a bismuth film electrode (BiFE) in an injection-moulded electrochemical micro-flow cell. The polystyrene three-electrode flow cell was fabricated with electrodes moulded from a conducting grade of polystyrene containing 40% carbon fibre, one of which was precoated with Ag to enable its use as an on-chip Ag/AgCl reference electrode. CAdSV of Co(II) and Ni(II) in the presence of dimethylglyoxime (DMG) with nitrite employed as the catalyst was performed in order to assess the performance of the flow cell with an in-line plated BiFE. The injection-moulded electrodes were found to be suitable substrates for the formation of BiFEs. Key parameters such as the plating solution matrix, plating flow rate, analysis flow rate, solution composition and square-wave parameters have been characterised and optimal conditions selected for successful and rapid analysis of Co(II) and Ni(II) at the ppb level. The analytical response was linear over the range 1 to 20 ppb and deoxygenation of the sample solution was not required. The successful coupling of a microfluidic flow cell with a BiFE, thereby forming a “mercury-free” AdSV flow analysis sensor, shows promise for industrial and in-the-field applications where inexpensive, compact, and robust instrumentation capable of low-volume analysis is required.     

Separation and sensitive determination of quercetin in <Emphasis Type="Italic">Rosa canina</Emphasis> L. using solidified floating organic drop microextraction followed by high-performance liquid chromatography determination

Quercetin is a polyphenolic flavonoid found in many plants and is used as a nutritional supplement. It has been reported to have biological properties that may play an important role in the prevention of human diseases, such as cancer, cardiovascular diseases, diabetes, ulcer, cataract and allergies. In this research, solidified floating organic drop microextraction coupled to high-performance liquid chromatography was used to extract and determine quercetin in Rosa canina L., growing in different areas of Lorestan Province in Iran. The effect of important experimental variables such as type and volume of extracting organic solvent, extraction temperature and time, pH and effect of ionic strength on the extraction recovery was investigated and optimized. Under the optimum extraction conditions, a linear response was obtained over the range of 0.5–40 µg mL^?1. Relative standard deviation (RSD%) and enrichment factor were found to be 3.4% and 230, respectively. The proposed method was applied successfully for the determination of quercetin in calycles and fruit of R. canina L. samples. The results showed good agreement compared with those obtained by a validated standard method.     

Modified Activated Carbon as Solid Phase Extraction Adsorbent for the Preconcentration and Determination of Trace As(III) in Environmental Samples by Graphite Furnace Atomic Absorption Spectrometry

A simple and selective method was developed for the preconcentration, separation, and determination of trace amounts of As(III) in an aqueous solution by solid phase extraction combined with graphite furnace atomic absorption spectrometry. Activated carbon (AC) was modified by sodium diethyldithiocarbamate (NaDDTC) and then used as a new, stable and easily prepared solid sorbent in a mini column for the extraction of As(III) in aqueous solution. Factors influencing the sorption and desorption of As(III), such as volume and concentration of eluent, sample pH, flow rate and effect of interfering ions on the recovery of As(III) have been systemically investigated. At pH 2.0 As(III) could be adsorbed quantitatively by NaDDTC‐AC, and then eluted completely with 2 mL of 3.0 mol·L^?1 HNO₃. The amount of eluted As(III) was measured using graphite furnace atomic absorption spectrometry. The detection limit of As(III) was 0.04 ng·mL^?1 with enrichment factor of 100 and the relative standard deviation (RSD, n=8) was 1.58% at 10 ng·mL^?1 level.