Automatic assignment of NOESY cross peaks and determination of the protein structure of a new world scorpion neurotoxin using NOAH/DIAMOD

The 3D NMR structures of the scorpion neurotoxin, CsE-v5, were determined from the same NOESY spectra with NOAH/DIAMOD, an automated assignment and 3D structure calculation software package, and with a conventional manual assignment combined with a distance geometry/simulated annealing (X-PLOR) refinement method. The NOESY assignments and the 3D structures obtained from the two independent methods were compared in detail. The NOAH/DIAMOD program suite uses feedback filtering and self-correcting distance geometry methods to automatically assign NOESY spectra and to calculate the 3D structure of a protein. NOESY cross peaks were automatically picked using a standard software package and combined with 74 manually assigned NOESY peaks to start the NOAH/DIAMOD calculations. After 63 NOAH/DIAMOD cycles, using REDAC procedures in the last 8 cycles, and final FANTOM constrained energy minimization, a bundle of 20 structures with the smallest target functions has a RMSD of 0.81 A for backbone atoms and 1.11 A for all heavy atoms to the mean structure. Despite some missing chemical shifts of side chain protons, 776 (including 74 manually assigned) of 1130 NOE peaks were unambiguously assigned, 150 peaks have more than one possible assignment compatible with the bundle structures, and only 30 peaks could not be assigned within the given chemical shift tolerance ranges in either the D1 or the D2 dimension. The remaining 174, mainly weak NOE peaks were not compatible with the final 20 best bundle structures at the last NOAH/DIAMOD cycle. The automatically determined structures agree well with the structures determined independently using the conventional method and the same NMR spectra, with the mean RMSD in well-defined regions of 0.84 A for bb and 1.48 A for all heavy atoms from residues 2-5, 18-26, 32-36, and 39-45. This study demonstrates the potential of the NOAH/DIAMOD program suite to automatically assign NMR data for proteins and determine their structure.     

Understanding compressive deformation in porous titanium

The aim of this study was to understand and compare the compression deformation behavior of porous metals with random and designed porosity. Direct observation, analysis and quantification of porosity parameters using microcomputed tomography (µCT) enabled the determination of relationship between porosity characteristics and compressive deformation of porous titanium. Porosity and pore size variations before and after deformation showed relatively uniform deformation in the sample with random porosity compared to designed porosity. Strong, continuous and regular arrangement of load-bearing sections in the designed porosity sample imparted higher Young's modulus and 0.2% proof strength than for the random porosity sample. The experimental results clearly showed the dependence of deformation behavior and mechanical properties on pore distribution and continuity of load-bearing cross-section.     

Enhancement of electrical stability of a-IGZO TFTs by improving the surface morphology and packing density of active channel

a-IGZO films were deposited on Si substrates by d.c sputtering technique with various working power densities (p_d) in the range of 0.74–2.22 W/cm². The correlation between material properties and their effects on electrical stability of a-IGZO thin-film transistor (TFTs) was studied as a function of p_d. At a p_d of 1.72 W/cm² a-IGZO film had smoothest surface roughness (0.309 nm) with In-rich and Ga-poor cation compositions as a channel. This structurally ordered TFTs exhibited a high field effect mobility of 9.14 cm²/Vs, a sub-threshold swing (S.S.) of 0.566 V/dec, and an on–off ratio of 10⁷. Additionally, the V_th shift in hysteresis loop is almost eliminated. It was shown that the densification of the a-IGZO film resulted in the reduction of its interface trap density (1.83 × 10¹² cm^?2), which contributes for the improvement in the electrical and thermal stability.     

Enhanced spectroscopic properties and Judd–Ofelt parameters of Er-doped tellurite glass: Effect of gold nanoparticles

Glasses with composition 70TeO₂–20ZnO–10Na₂O–0.5Er₂O₃–(x)Au are synthesized by melt-quenching technique. Their spectroscopic and optical characterizations are made. The presence of gold nanoparticles (Au NPs) with average size ～9 nm is confirmed from TEM micrograph. The value of E_dir is found to lie between 3.082 and 3.073 eV, while E_indir lies within 2.765 to 2.724 eV. The observed visible up-conversion (UC) emission under 779 nm excitation wavelength exhibits two bands centered at 546 nm (green) and 637 nm (red) in all samples. The glass with 0.4 mol% Au NPs shows dominant enhancement in the UC emission intensity of the order of 3.5 times for the green band (⁴S_3/2 → ⁴I_15/2) and a weaker enhancement for the red (⁴F_9/2 → ⁴I_15/2) band. The optical properties of the system are affirmed to depend strongly on the Au concentration in the dielectric medium. The absorption spectra consist of six bands attributed to absorption from ground state (⁴I_15/2) to ⁴I_13/2, ⁴I_11/2, ⁴I_9/2, ⁴F_9/2, ²H_11/2, and ⁴F_7/2 excited states. The structural reveals that the types of bonding and difference in electro-negativity can be manipulated by the presence of metallic NPs in glass matrix. Judd–Ofelt analysis asserts the increase in Ω₂ and Ω₆ parameters with the addition of Au NPs and the enhancement of green and red emissions. The enhancement is mainly attributed to large plasmonic effect of Au NPs. The proposed glasses can be nominated as potential materials for solid state laser developments.     

Synthesis of 2,2,4-trimethyl-1,2-dihydroquinolines over metal-modified 12-tungstophosphoric acid-supported γ-Al2O3 catalyst

Research on Chemical Intermediates - In spite of having significant pharmacological importance, scalable synthesis of 2,2,4-trimethyl-1,2-H-dihydroquinoline (TMQ) is always being cumbersome due to...     

Synthesis,structural, DFT investigations and antibacterial activity assessment of pyrazoline-thiocyanatoethanone derivatives as thymidylate kinase inhibitors

Two novel compounds 1-(5-[4-fluorophenyl]-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)-2-thiocyanatoethanone (FSCN) and 1-(5-[4-chlorophenyl]-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)-2-thiocyanatoethanone (ClSCN) were synthesized and characterized by SC-XRD, 1H NMR, 13C NMR, FTIR, and UV methods. The X-ray diffraction studies were utilized to prove the 3D crystal structures of FSCN and ClSCN. In both the compounds, the packing is mostly driven by C H⋯N, C H⋯O, and C H⋯π (benzene ring as an acceptor) interactions. In ClSCN, additionally, the π⋯π interaction is observed between the pyrazole ring of one molecule and the benzene ring of the other molecule. The experimental values were compared with the results of DFT/B3LYP/6-311G++(d,p) theoretical computations. The pharmacological screening for FSCN and ClSCN was performed using molinspiration and PreADMET web server. To analyze antibacterial inhibition of the synthesized ligands and Ciprofloxacin (control drug) were interacted with antibacterial protein Thymidylate Kinase (TMK) (PDB ID: 4QGG) with the help of AutoDock Vina tool. The ADMET and docking results of FSCN and ClSCN pointed out the better drug likeness nature and good inhibition behavior with TMK protein. The antibacterial in vitro studies suggested that FSCN compound inhibited well with antibacterial strains than that of ClSCN. The current investigation suggests that with further improvements, our compounds could be preferred as substitute medicine for bacterial diseases.     

L-proline/urea catalyzed,novel, and eco-friendly synthesis of coumarin substituted-3-indoloxanthenes

A green and eco-friendly synthesis of coumarin substituted-3-indoloxanthenes 4(a-l) has been developed using urea/L-proline as simple catalyst. Two efficient methods have been described for the synthesis of these 3-indoloxanthene derivatives. In the first method, Knoevenagel condensation, then Pinner cyclisation followed by 1,4 addition between 4-hydroxy-1-methyl-2-oxo-1,2-dihydrocoumarin-3-carbaldehyde 1(a-b) , with cyclohexane-1,3-dione (2) and indole 3(a-f) using of L-proline as catalyst was described. In the second method, urea/thiourea catalyzes the same reaction at 100°C for 10 minutes to afford the title compounds 4(a-l) . These two protocols involve eco-friendly and inexpensive catalysts, give excellent yields of the clean products without the need of column chromatography for their isolation or purification.     

Probing the Design Rationale of a High-Performing Faujasitic Zeotype Engineered to have Hierarchical Porosity and Moderated Acidity

Porosity and acidity are influential properties in the rational design of solid-acid catalysts. Probing the physicochemical characteristics of an acidic zeotype framework at the molecular level can provide valuable insights in understanding intrinsic reaction pathways, for affording structure–activity relationships. Herein, we employ a variety of probe-based techniques (including positron annihilation lifetime spectroscopy (PALS), FTIR and solid-state NMR spectroscopy) to demonstrate how a hierarchical design strategy for a faujasitic (FAU) zeotype (synthesized for the first time, via a soft-templating approach, with high phase-purity) can be used to simultaneously modify the porosity and modulate the acidity for an industrially significant catalytic process (Beckmann rearrangement). Detailed characterization of hierarchically porous (HP) SAPO-37 reveals enhanced mass-transport characteristics and moderated acidity, which leads to superior catalytic performance and increased resistance to deactivation by coking, compared to its microporous counterpart, further vindicating the interplay between porosity and moderated acidity.     

The asymptotic behavior of nonoscillatory solutions of nonlinear neutral type difference equations

In this paper, the authors study the asymptotic behavior of solutions of second-order neutral type difference equations of the form

Δ²(y_n+py_n−k)+f(n,y_n−ℓ)=0,n