Optical Chemical Sensors Based on Sol-Gel Materials: Recent Advances and Critical Issues

The use of the sol-gel process to produce materials for optical chemical sensors and biosensors is attracting considerable interest. This interest derives mainly from the design flexibility of the sol-gel process and the ease of fabrication. In most applications the sol-gel material is used to provide a microporous support matrix in which analyte-sensitive species are entrapped and into which smaller analyte molecules may diffuse. Sensors based on entrapped organic and inorganic dyes, enzymes and other biomolecules have been reported. A range of sensor configurations has been employed, including monoliths, thin films, as well as more elaborate structures. In this paper a selection is presented of recent significant developments in optical chemical sensors which employ solgel-derived materials. These developments include the tailoring of sol-gel materials to optimise sensor response, advanced waveguide structures and novel probe-tip sensors. Those issues which remain critical to the eventual deployment of sol-gel sensors are examined. In particular, the problems of leaching, microstructural stability, diffusion-limited response time, and susceptibility to interferents are discussed and some solutions proposed.     

Self-assembly patterns formed upon solvent evaporation of aqueous cetyltrimethylammonium bromide-coated gold nanoparticles of various shapes

Gold nanocrystals of various shapes, which were produced in high yield in the presence of cetyltrimethylammonium bromide (CTAB), showed a range of two-dimensional self-assembly patterns upon drying from aqueous solution. The interparticle spacings were independent of the size and shape of the gold nanocrystals. Energy-dispersive X-ray analysis (EDAX) and Fourier-transform infrared (FTIR) spectroscopic studies revealed that the CTAB molecules adsorb onto surfaces of the gold nanocrystals in a bilayer or multilayer fashion, consistent with other groups' results. Zeta potential measurements showed that CTAB-coated nanocrystals were positively charged and the zeta potential remained almost the same upon two centrifugations and redispersion of the nanocrystals in deionized water, confirming the high stability of the surfactant-nanoparticle interaction. The nanocrystal shape strongly influenced the nature of the self-assembly patterns, in some cases in accord with theoretical predictions. CTAB is proposed as the medium for self-assembly, via interdigitation of its hydrophobic chains from adjacent nanocrystals for close contact, or via sharing a layer of counterions for larger inter-nanocrystal spacings.     

Mechanism of Exciplex Decay: The Quantum Yields and the Rate Constants of Triplet Formation from 9-Cyanophenanthrene Exciplexes

The quantum yields of the formation of triplet states from the exciplexes of 9-cyanophenanthrene with 1,2,3- and 1,3,5-trimethoxybenzenes in solvents of different polarity and the rate constants of intersystem crossing in these exciplexes were measured. In the solvents of weak and intermediate polarity, the exciplexes decay predominantly via internal conversion and intersystem crossing, whereas the decay in polar solvents occurs additionally via dissociation into radical ions.     

Optical detection and discrimination of cystic fibrosis-related genetic mutations using oligonucleotide–nanoparticle conjugates

Novel methods for application of oligonucleotide–gold nanoparticle conjugates to selective colorimetric detection and discrimination of cystic fibrosis (CF) related genetic mutations in model oligonucleotide systems are presented. Three-strand oligonucleotide complexes are employed, wherein two probe oligonucleotide–gold nanoparticle conjugates are linked together by a third target oligonucleotide strand bearing the CF-related mutation(s). By monitoring the temperature dependence of the optical properties of the complexes, either in solution or on silica gel plates, melting behaviors may be accurately and reproducibly compared. Using this approach, fully complementary sequences are successfully distinguished from mismatched sequences, with single base mismatch resolution, for F 508, M470V, R74W and R75Q mutations.     

Discovery of a potent,non-peptide bradykinin B1 receptor antagonist

Bradykinin (BK) plays an important role in the pathophysiological processes accompanying pain and inflammation. Selective bradykinin B1 receptor antagonists have been shown to be anti-nociceptive in animal models and could be novel therapeutic agents for the treatment of pain and inflammation. We have explored chemical modifications in a series of dihydroquinoxalinone sulfonamides to evaluate the effects of various structural changes on biological activity. The optimization of a screening lead compound, facilitated by a homology model of the BK B1 receptor, culminated in the discovery of a potent human BK B1 receptor antagonist. Results from site-directed mutagenesis studies and experiments in an animal pain model are presented.     

High-energy collision-induced dissociation of multiply charged polypeptides produced by electrospray

The recent commercial implementation of an electrospray source on a four-sector mass spectrometer has allowed the study of high-energy collisional activation of multiply charged cations. With this configuration, higher mass-to-charge ratios can be accommodated in both precursor ion selection and fragment ion detection. Good mass accuracy facilitates analysis of fragment ions and allows more reliable mechanistic correlation of these fragments. A convenient scheme was devised to permit the use of kilovolt potentials in both MS-I and MS-II, with precursors of varying charge states. Algorithms were devised to assign masses of different types of multiply charged fragment ions. Nine polypeptides were studied in the mass range 2000–5000 Da. Through this entire mass range, fragment ions were observed to be amply formed by cleavages in both the backbone and side chains, analogous to high-energy collisional activation of singly charged ions. This stands in sharp contrast to the patterns reported with low-energy, multiple collisions. Abundances of sequence ion series are influenced by the positions of basic residues. Analysis of charge distributions in fragment ions also indicates that the charges tend to be spread out across the peptides.     

New procedure for isolation of amino acids based on selective hydrolysis of trimethylsilyl derivatives

A rapid procedure for the isolation of amino acids from physiological fluids by class separation suitable for gas chromatographic and gas chromatographic-mass spectrometric analysis is described. A physiological fluid such as plasma is adjusted to pH 2 and extracted with diethyl ether to remove organic acids and neutrals. After precipitation of proteins with trichloroacetic acid, the aqueous plasma is dried and derivatized by trimethylsilylation. Organic compounds like sugars and amino acids are rendered soluble in petroleum ether leaving inorganic salts when the soluble layer is transferred. Separation of sugars from amino acids is achieved by taking advantage of the different rates of aqueous hydrolysis of the trimethylsilyl (TMS) derivatives. Mixing the petroleum ether extract with a small volume of water results in two phases. The petroleum ether layer contains TMS-Sugar constituents of plasma and the aqueous layer contains free amino acids and amines. This procedure was used to isolate L-dopa, 3-O-methyldopa and tyrosine from human plasma in a quantitation assay using 18O-labelled amino acids and gas chromatography-mass spectrometry.     

Numerical Modeling of an Ar–H<Subscript>2</Subscript> Radio-Frequency Plasma Reactor under Thermal and Chemical Nonequilibrium Conditions

The species densities and the thermal and chemical nonequilibrium phenomena in an Ar–H₂ radio frequency inductively coupled plasma reactor used for hydrogenation of materials have been investigated through numerical simulation. The mathematical model consists of a two-temperature fluid dynamics model and a chemical kinetics model that takes into account the effect of local chemical nonequilibrium. Computations are carried out for the rf plasma running at 11.7 kW and 27 kPa for different Ar–H₂ mixtures and for pure argon. Predicted results for the electron and heavy-species temperatures, the species densities, as well as the degree of thermal and chemical nonequilibrium, are presented in detail. It is found that the electron and hydrogen atom densities in the reactor and in the near-wall region of the torch are strongly altered by nonequilibrium effects. The hydrogen atom density remains high in the reactor zone, and peaks in a region that has been found to be attractive for material processing. Deviations from thermal and chemical equilibrium are greatly reduced by the addition of hydrogen to an argon plasma.     

A computational study of the effectiveness of the frontier molecular orbital formalism in predicting conformational isomerism in (p-RC6H4NC)2W(dppe)2

Ab initio electronic structure calculations on a series of ligands, p-RC6H4NC:, indicate, that the energy of the LUMO correlates with the electron-withdrawing/donating capabilities of the substituent group, which determines the relative pi-acidity of the ligand. Depending on the nature of the para substituent group on the aryl isocyanide ligand, bis(aryl isocyanide) complexes of tungsten-containing bulky bidentate arylphosphine ligands adopt either cis or trans conformations. The frontier molecular orbital formalism predicts that strong pi-acids, which contain electron-withdrawing groups, tend to polarize sufficient charge density away from the metal center to effect the formation of the sterically less favorable but electronically stabilized cis conformer. Density functional theory calculations on similar complexes containing phosphines which do not impose severe steric contraints indicate that the balance between steric and electronic stabilization can be effectively predicted by comparing the relative energies of the ligand LUMOs.     

C*-Algebras with the Approximate Positive Factorization Property

We say that a unital -algebra has the approximate positive factorization property (APFP) if every element of is a norm limit of products of positive elements of . (There is also a definition for the nonunital case.) T. Quinn has recently shown that a unital AF algebra has the APFP if and only if it has no finite dimensional quotients. This paper is a more systematic investigation of -algebras with the APFP. We prove various properties of such algebras. For example: They have connected invertible group, trivial , and stable rank 1. In the unital case, the group separates the tracial states. The APFP passes to matrix algebras, and if is an ideal in such that and have the APFP, then so does . We also give some new examples of -algebras with the APFP, including type factors and infinite-dimensional simple unital direct limits of homogeneous -algebras with slow dimension growth, real rank zero, and trivial group. Simple direct limits of homogeneous -algebras with slow dimension growth which have the APFP must have real rank zero, but we also give examples of (nonsimple) unital algebras with the APFP which do not have real rank zero. Our analysis leads to the introduction of a new concept of rank for a -algebra that may be of interest in the future.