Toward multistation rotaxanes using metalloporphyrin coordination templating

This paper describes some approaches toward the templated synthesis of rotaxanes incorporating strapped metalloporphyrin moieties as the shuttle unit, with the thread component containing both a neutral diimide "station" and a functionalized pyridine moiety, the latter acting not only as a template but also as a second binding motif. In the first instance, the use of appropriately 3,5-difunctionalized pyridine esters and naphthoquinol-strapped rhodium(III) chloride porphyrins in a stoppering approach to rotaxanes produced only unlinked components: the flexibility of the strap allowed sufficient room for the potential thread unit to bind on the same face of the porphyrin as the strap, while not being interlocked through it. An alternative strategy involving a 1,3-dipolar cycloaddition reaction (a "click" reaction) between azides and alkynes, producing triazole linkers in the thread component of rotaxanes, was more successful. Both porphyrinic (zinc, free base, and rhodium(III) derivatives) and crown ether rotaxanes were successfully produced, with multifunctional (triazole and naphthodiimide) thread units. The potential for molecular motion through the use of stimuli such as acid, solvent, and competing ligands was investigated, with limited success. The same cycloaddition methodology was extended to pyridine-templated analogues of the thread components in the Rh(III)-strapped porphyrins, but again, only unlinked thread and porphyrin shuttle units were produced.     

Near-complete external difference families

We introduce and explore near-complete external difference families, a partitioning of the nonidentity elements of a group so that each nonidentity element is expressible as a difference of elements from distinct subsets a fixed number of times. We show that the existence of such an object implies the existence of a near-resolvable design. We provide examples and general constructions of these objects, some of which lead to new parameter families of near-resolvable designs on a non-prime-power number of points. Our constructions employ cyclotomy, partial difference sets, and Galois rings.     

Catalytic pyrolysis of oak via pyroprobe and bench scale, packed bed pyrolysis reactors

The pyrolytic conversion of oak sawdust at 500 °C in flowing He over eight proprietary catalysts is described and compared to the control bed material, quartz sand. The reactions were conducted and compared in two reactors, an analytical, μg-scale pyroprobe reactor and a bench, g-scale packed bed reactor. The catalysts examined were modified acid catalysts, dealuminated-zeolite Y, β-zeolite, a naturally occurring metal hydroxide containing mineral, mordenite, and a mesoporous aluminosilicate molecular sieve. The packed bed reactor allowed the collection of three bulk product fractions, char, liquid, and gas, all of which could not be obtained from the μg-scale pyroprobe reactions. The catalysts effect on the mass balance of the bulk fractions tended toward more chars and less liquid compared to the sand control. The catalysts’ effects on the liquid products obtained in both reactors shifted away from acetic acid, furfural and higher molecular weight phenolics obtained with sand to lower molecular weight aromatics. This halved the total acid number of the liquid fraction and raised the pH by up to 1.4 units. The modified catalysts’ effects on the gas products from both reactors did not follow a specific trend. Instead, specific catalysts were able to enrich specific gas species up to a factor of 15 while suppressing the formation of others compared to the sand control. Two catalysts, β-zeolite and a naturally occurring metal hydroxide containing mineral, were regenerated and recycled up to five times with no loss of activity.     

Clipping and stoppering anion templated synthesis of a [2]rotaxane host system

A new [2]rotaxane host system containing nitro-isophthalamide macrocycle and polyether functionalised pyridinium axle components is prepared via clipping and stoppering synthetic methodologies using chloride anion templation. After removing the chloride anion template, (1)H NMR titration experiments reveal the unique interlocked host cavity to be highly selective for binding chloride and bromide in preference to basic oxoanions in competitive aqueous solvent mixtures. The rotaxane host system proved to be a superior anion complexant in comparison to the individual macrocycle and axle components. The anion binding affinity of the novel rotaxane is also investigated via molecular dynamics simulations and in general the structural data obtained corroborates the experimental solution anion recognition behaviour.     

Toward a digital gene response: RNA G-quadruplexes with fewer quartets fold with higher cooperativity

Changes in RNA conformation can alter gene expression. The guanine quadruplex sequence (GQS) is an RNA motif that folds in the presence of K(+) ions. Changes in the conformation of this motif could be especially important in regulating gene expression in plants because intracellular K(+) concentrations often increase during drought stress. Little is known about the folding thermodynamics of RNA GQS. We show here that RNA GQS with tracts containing three G's [e.g., (GGGxx)(4)] have a modest dependence on the K(+) concentration, folding with no or even negative cooperativity (Hill coefficients ≤1), and are associated with populated folding intermediates. In contrast, GQS with tracts containing just two G's [e.g., (GGxx)(4)] have a steep dependence on the K(+) concentration and fold with positive cooperativity (Hill coefficients of 1.7-2.7) without significantly populating intermediate states. We postulate that in plants, the more stable G3 sequences are largely folded even under unstressed conditions, while the less stable G2 sequences fold only at the higher K(+) concentrations associated with cellular stress, wherein they respond sharply to changing K(+) concentrations. Given the binary nature of their folding, G2 sequences may find application in computation with DNA and in engineering of genetic circuits.     

Photoinitiated polymerization of aryl cyclic sulfonium salts

Polymers are produced by direct photolysis of substituted aryl cyclic sulfonium Zwitterionic salts in solution or film. Analysis of zwitterionic monomers via ¹³C NMR, UV, and IR spectroscopy as well as X‐ray diffraction clearly identifies the structures taking part in the photoinduced polymerization in the solid crystalline films. The protonated form of the zwitterionic monomers, however, fails to produce detectable amounts of polymer upon photolysis under any conditions. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 571–584, 2001     

Thermal Valence Rearrangements of Heterocycles. Part 2. A new synthetic approach towards the indole ring system

A new synthetic approach towards the indole ring system is described. When dimethyl 1-methyl-2-oxa-1-aza-spiro[4.5]dec-3-ene-3,4-dicarboxylate ( 6 ) was refluxed in toluene, the previously known dimethyl 4,5,6,7-tetra-hydro-1-methyl-1H-indole-2,3-dicarboxylate ( 7 ) was obtained in 71% yield, via a 2,3-dihydroisoxazole-pyrrole rearrangement. After treatment with DDQ , the tetrahydro analogue 7 was converted to the corresponding dimethyl 1-methyl-1H-indole-2,3-dicarboxylate ( 8 ).