Improved detection of amylase activity by sodium dodecyl sulfate-polyacrylamide gel electrophoresis with copolymerized starch

An improved method, based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) for detection of amylase activity is described. This method will allow better characterization of certain amylases than that obtained by the Davis technique. The main features of the technique are: (i) identification of amylase bands and molecular mass determination are possible in the same gel; (ii) the hydrolysis of copolymerized substrate during electrophoretic separation is prevented using very low temperatures instead of inactivating agents such as chelating agents; and (iii) the technique is applicable to reveal amylase activity in a wide range of biological samples. The method is not useful for enzymes sensitive to SDS and for high molecular mass amylases.     

Synthesis,Crystal Structure and Properties of [Cu(phen)3][Cu(pheida)2]·10H2O and [(phen)2Cu(μ‐BAAP)Cu(μ‐BAAP)Cu(phen)2][Cu(BAAP)2]·8.5H2O (H2pheida = N‐phenetyl‐iminodiacetic acid,H2BAAP = N‐benzylaminoacetic‐2‐propionic acid)

The salts [Cu(phen)₃][Cu(pheida)₂]·10H₂O ( 1 ) and [(phen)₂Cu(μ‐BAAP)Cu(μ‐BAAP)Cu(phen)₂][Cu(BAAP)₂]·8.5H₂O ( 2 ) (H₂pheida = N‐phenetyl‐iminodiacetic acid, H₂BAAP = N‐benzylaminoacetic‐2‐propionic acid, phen = 1, 10‐phenanthroline) have been prepared and studied by thermal, spectroscopic and X‐ray diffraction methods. 1 has the rather unusual [Cu(phen)₃]²⁺ cation and two non‐equivalent [Cu(pheida)₂]^2— anions with a coordination type 4+2 but quite different tetragonality (T = 0.848 and 0.703 for anions 1 and 2, respectively). The crystal consists of multi‐π, π‐stacked chains (…anion 2 — cation — cation — anion 2…) connected by hydrophobic interactions; these chains build channels which are partially filled by anions 1 and water molecules. In contrast, compound 2 has a mixed‐ligand trinuclear cation with a bridging central moiety close similar to the counter anion. The formation of such a trinuclear cation is discussed as a consequence of the most advantageous molecular recognition process between [Cu(phen)₂(H₂O)_{1 or 2}]²⁺ and [Cu(BAAP)₂]^2— in solution. In the crystal of 2, multi‐π, π‐stacked arrays of C₆‐rings from phen and (BAAP)^2— ligands of trinuclear cations generate channels where counter anions and water molecules are located.     

Capillary electrophoresis-mass spectrometry for the analysis of quaternary ammonium herbicides

Conditions for the simultaneous determination of the three herbicides paraquat, diquat and difenzoquat and the two plant growth regulators chlormequat and mepiquat by pressure-assisted capillary electrophoresis coupled to mass spectrometry (ion-trap) using electrospray as ionisation source have been established. A 200 mM formic acid-ammonium formate buffer solution at pH 3.0 with 50% of methanol was used as carrier electrolyte. Some capillary electrophoresis-mass spectrometry parameters such as sheath liquid and sheath gas flow-rates, sheath liquid composition, electrospray voltage andthe CE capillary position were optimised. The MS and MS-MS spectra of positive ions were studied in order to obtain structural information for the confirmation of the identity. The use of labelled standards allowed to confirm fragment ions assignation. The detection limits, based on a signal-to-noise ratio of 3:1, were between 0.5 and 2.5 mg l(-1) with hydrodynamic injection (10 s) and between 1 and 10 microg l(-1) with elecrokinetic injection (20 s, 10 kV) using standards in ultrapure water. Quality parameters such as linearity and run-to-run precision (n=6) were established. Quantitation was carried out using labelled standards. The method has been applied to the analysis of contaminated irrigation water and spiked mineral water samples.     

Interpolated potential energy surfaces and dynamics for atom exchange between H and H3(+), and D and H3(+)

Two ab initio interpolated potential energy surfaces have been constructed to study the dynamics of atomic hydrogen/deuterium exchange in collisions of H(3)(+) with H (D). One of the surfaces is based on energy calculations using quadratic configuration interaction with single and double excitations. The second includes a perturbative treatment of the triple excitations and an additive correction for basis set deficiency. Results from classical dynamics simulation of the exchange reaction on these surfaces are presented and discussed.     

On-line ion-pair solid-phase extraction-liquid chromatography-mass spectrometry for the analysis of quaternary ammonium herbicides

An ion-pair on-line solid-phase extraction procedure using C8 extraction disks, suitable for liquid chromatography-mass spectrometry analysis is developed to determine quaternary ammonium herbicides (quats) in water samples. The separation of these compounds was performed using ion-pair chromatography with heptafluorobutyric acid (15 mM, pH 3.3) and acetonitrile gradient elution. Detection was carried out using a quadrupole mass spectrometer. Water sample volumes up to 50 ml can be preconcentrated with recoveries higher than 70%. Good precision and accuracy (day-to-day and run-to-run) were obtained and the detection limits ranged from 6 to 85 ng l(-1). The proposed on-line ion-pair solid-phase method enables compliance with European Community directives for drinking waters (100 ng l(-1)).     

State-of-the-art of the hyphenation of capillary electrochromatography with mass spectrometry

The high separation efficiency and loading capacity of capillary electrochromatography (CEC) make it an attractive separation mode for coupling with mass spectrometry (MS), which has the ability to unambiguously identify analytes with high selectivity and sensitivity. We present an overview of recent advances on both instrumentation and separation columns employed in CEC-MS systems. In particular, the main characteristics of the stationary phases, as well as the configurations of the column outlet that are related with the coupling arrangements of the MS ionization sources, are reported. At present, packed columns and conventional electrospray ionization (ESI) sources are mainly employed in CEC-MS. Nevertheless, the use of monolithic capillary columns and nanoelectrospray sources has the potential for wide acceptance in the next future. Moreover, the main features of several mass analyzers including ion trap, quadrupole, time-of-flight, magnetic sector, and Fourier transform-ion cyclotron resonance are examined. Finally, current applications of this technology, mainly in the pharmaceutical field and proteomics, are reviewed.     

Solid-phase extraction and sample stacking-capillary electrophoresis for the determination of quaternary ammonium herbicides in drinking water

Conditions for the simultaneous determination of paraquat, diquat and difenzoquat by capillary zone electrophoresis were established by combining two preconcentration procedures. Off-line solid-phase extraction was used for the isolation and preconcentration of quats in drinking water. Quats were then analysed by capillary electrophoresis using sample stacking with matrix removal as on-column preconcentration procedure. Two different porous graphitic carbon cartridges were compared. The breakthrough volumes of the three herbicides were calculated and the loading capacity of the sorbents was compared. Recoveries higher than 80% for difenzoquat and around 40% for paraquat and diquat were obtained when a sample volume of 250 ml was percolated. For the stacking-capillary electrophoresis analysis of quats, 50 mM acetic acid-ammonium acetate (pH 4.0), 0.8 mM cetyltrimethylammonium bromide with 5% (v/v) methanol as carrier electrolyte was used. Detection limits, based on a signal-to-noise ratio of 3:1, were lower than 0.3 microg l(-1) for standards in Milli-Q water, and lower than 2.2 microg l(-1) for drinking water samples. Run-to-run and day-to-day precision of the method were established. The two preconcentration procedures used together was successfully applied to the analysis of the three herbicides in spiked drinking water at concentrations below the maximum admissible US Environmental Protection Agency levels.     

Analysis of the herbicides paraquat,diquat and difenzoquat in drinking water by micellar electrokinetic chromatography using sweeping and cation selective exhaustive injection

Optimum conditions for the determination of the herbicides paraquat, diquat and difenzoquat by micellar electrokinetic chromatography (MEKC) using sweeping and cation-selective exhaustive injection (CSEI) as on-line concentration methods were developed. Sodium dodecyl sulfate (80 mM) in 50 mM phosphate buffer (pH 2.5) with 20% acetonitrile was used as a background electrolyte for the methods studied. The limits of detection, based on a signal-to-noise ratio of 3:1, were about 2.6-5.1 mg 1(-1) in purified water when MEKC was applied for the standards. By using an on-line preconcentration method known as sweeping-MEKC, up to a 500-fold increase in detection sensitivity was obtained whereas up to a 50 000-fold increase for CSEI-sweeping-MEKC was achieved. The limits of detection using optimum CSEI-sweeping-MEKC were lower than 1 microg 1(-1) and the method was validated obtaining good reproducibility (relative standard deviation lower than 22%) and linearity. CSEI-sweeping-MEKC was successfully applied to the determination of the three herbicides in spiked tap water below the levels established by the US Environmental Protection Agency.     

Comparison of different commercial solid-phase extraction cartridges used to extract heterocyclic amines from a lyophilised meat extract

Heterocyclic amines are a group of potent mutagenic compounds which are generated when muscle meat is cooked. Since they are possible human carcinogens, these mutagens have received considerable attention in recent years, and several analytical techniques have been developed for their quantification. Although the purification step is one of the most important, there are a great number of variables influencing the recovery of the amines, especially when real samples are analysed. In this work we studied the influence of sample spiking mode on the recoveries. Furthermore, on the basis of a previously developed clean-up method, the effect of changing commercial source and structure of the sorbents used in two solid-phase extraction steps was examined. This purification method was applied to the quantification of the heterocyclic aromatic amines present in a lyophilised meat extract by means of liquid chromatography–mass spectrometry.     

High mass accuracy in-source collision-induced dissociation tandem mass spectrometry and multi-step mass spectrometry as complementary tools for fragmentation studies of quaternary ammonium herbicides

Fragmentation studies using both an ion-trap mass analyzer and a hybrid quadrupole time-of-flight (Q-TOF) mass spectrometer were performed in order to establish the fragmentation pathways of organic molecules. A general strategy combining MSn data (n = 1-4) in an ion-trap analyzer with tandem mass spectrometry and in-source collision-induced dissociation tandem mass spectrometry (CID MS/MS) in a Q-TOF instrument was applied. The MSn data were used to propose a tentative fragmentation pathway following genealogical relationships. When several assignments were possible, MS/MS and in-source CID MS/MS (Q-TOF) allowed the elemental compositions of the fragments to be confirmed. Quaternary ammonium herbicides (quats) were used as test compounds and their fragmentation pathways were established. The elemental composition of the fragments was confirmed using the TOF analyzer with relative errors <0.0023 Da. Some fragments previously reported in the literature were reassigned taking advantage of the high mass resolution and accuracy of the Q-TOF instrument, which made it possible to solve losses where nitrogen was involved.