Rational design and crystal structure determination of a 3-D metal-organic jungle-gym-like open framework

A new three-dimensional (3-D) jungle-gym-like open metal-organic framework has been synthesized from a two-dimensional (2-D) layer compound using a heterogeneous pillar insertion reaction. Both the starting 2-D layer and the resulting 3-D open compounds have been characterized using X-ray crystallography.     

Marginal electron density and density-difference functions

Summary For visual analysis of the density reorganization and distortion, the one-dimensional cut (x, y ₀,z ₀) and the two-dimensional cut (x, y, z ₀) of the three-dimensional electron density difference function (x, y, z) are frequently employed. However, these cut functions do not satisfy any sum rules in contrast to the original difference function (x, y, z). To avoid this difficulty, the use of the marginal electron density functions _x (x) and _xy (x, y) and their difference functions _x (x) and _xy (x, y) is proposed. The marginal densities are condensation of the three-dimensional density onto a particular plane or line of our interest, and they satisfy the sum rule (i.e., the conservation of the number of electrons) exactly. Some basic properties of the marginal electron density are clarified for typical diatomic molecular orbitals. An illustrative application is given for the bonding and antibonding processes in the H₂ system.     

Modification of Escherichia coli single-stranded DNA binding protein with gold nanoparticles for electrochemical detection of DNA hybridization

The unique binding event between Escherichia coli single-stranded DNA binding protein (SSB) and single-stranded oligonucleotides conjugated to gold (Au) nanoparticles is utilized for the electrochemical detection of DNA hybridization. SSB was attached onto a self-assembled monolayer (SAM) of single-stranded oligonucleotide modified Au nanoparticle, and the resulting Au-tagged SSB was used as the hybridization label. Changes in the Au oxidation signal was monitored upon binding of Au tagged SSB to probe and hybrid on the electrode surface. The amplified oxidation signal of Au nanoparticles provided a detection limit of 2.17 pM target DNA, which can be applied to genetic diagnosis applications. This work presented here has important implications with regard to combining a biological binding event between a protein and DNA with a solid transducer and metal nanoparticles.     

New phlegmarane-type, cernuane-type, and quinolizidine alkaloids from two species of Lycopodium

Two new phlegmarane-type alkaloids, cermizines A (1) and B (2), three new quinolizidine alkaloids, cermizine C (3) and senepodines G (4) and H (5), and a new C₁₆N₂ type alkaloid consisting of a quinolizidine and a piperidine ring, cermizine D (6), as well as two new cernuane-type alkaloids, cernuine N-oxide (7) and lycocernuine N-oxide (8), have been isolated together with cernuine (9) and lycocernuine (10) from the club moss Lycopodium cernuum and L. chinense. The relative stereochemistry of 1-4 and 6, and the absolute stereochemistry of 5, 7, and 8 were elucidated by combination of NOESY correlations, modified Mosher's method, chemical transformations, and computational methods. Cermizine D (6) might be a biosynthetic intermediate of cernuane-type alkaloids such as 7-10.     

Extraction of sodium and potassium perchlorates with benzo-18-crown-6 into various organic solvents. Quantitative elucidation of anion effects on the extraction-ability and -selectivity for Na(+) and K(+)

To investigate quantitatively the anion effect on the extraction-ability and -selectivity of benzo-18-crown-6 (B18C6) for alkali metal ions, the constants for overall extraction into various diluents having low dielectric constants (K(ex)) and aqueous ion-pair formation (K(MLA)) of B18C6-sodium and potassium perchlorate 1:1:1 complexes (MLA) were determined at 25 degrees C. The K(ex) value was analyzed by the four fundamental equilibrium constants. The K(MLA) values were determined by applying our established method to this perchlorate extraction system. The K(M(B18C6)A) value of the perchlorate is much larger for K(+) than for Na(+), and is much smaller than that of the picrate. The K(M(B18C6)A) value makes a minor contribution to the magnitude of K(ex) for the perchlorate system, but a major contribution to that for the picrate one. The distribution behavior of the B18C6 1:1:1 complexes with the alkali metal perchlorates follows the regular solution theory. For the diluent with a high dipole moment, however, the 1:1:1 complexes somewhat undergo the dipole-dipole interaction. B18C6 always shows very high extraction selectivity for KClO(4) over NaClO(4), which is determined mostly by the much greater log/(log K(MLA)) value for K(+) than for Na(+). The extraction-ability and -selectivity of B18C6 for Na(+) and K(+) ions with a perchlorate ion were compared with those with a picrate ion in terms of the fundamental equilibrium constants. The K(+) extraction-selectivity of B18C6 over Na(+) for the perchlorate system is superior to that for the picrate one, which is caused largely by the greater log/(log K(K(B18C6)A))-log/(log K(Na(B18C6)A)) value for the perchlorate than for the picrate. The perchlorate system is recommended for extraction separation of K(+) from Na(+).     

New functional microspheres with active succinimide groups

Radiation-induced polymerization of monomers, for example N-methacryl-oxysuccinimide (MASu) and diethylene glycol dimethacrylate (2G), in ethyl propionate, was performed from +25°C to –78°C. The copoly (MASu/2G) microspheres were obtained in MASu monomer compositions of 30 wt % or below. The average particle diameter of copoly(MASu/2G, 20/80 wt %) microspheres obtained at irradiation temperatures of 25°, 0°, and –43 °C were 0.81±0.29, 0.63±0.26, and 0.90±0.43 m, respectively. No microspheres were formed when irradiated at –78 °C. The reactivity of the succinimide groups on the surface of copoly(MASu/2G, 20/80 wt%) microspheres was checked by reacting with ethylene diamine. The maximal amount of reacting succinimide groups was 9.4±0.5 nol/g, which corresponds to about 1 % of the total number of succinimide groups in the microsphere.     

Reactivities of Stable Rotamers: XLIV. Ring-Opening Reactions of 1-(9-Fluorenyl)-2-(2-methyl-2-oxiranyl)naphthalene Rotamers With Acids and the Structure of Oxiranes

X-ray crystallography of the ap-form of the 1-(9-fluorenyl)-2-(2-methyl-2-oxiranyl)naphthalene has revealed that the carbon atom of the oxirane which is connected to the naphthyl group in this compound is almost planar. The specific structural features of the epoxy ring in this compound are caused by sterical effects and by the presence of a -system in the immediate vicinity of the oxirane ring. Certain differences have been found also in reactivity of rotational isomers of 2-X-substituted 1-[1-(9-fluorenyl)-2-naphthyl]ethyl cations (X = O, S, Se). At X = O arose more deprotonation product from the -position of the oxygen than in reactions of sulfur and selenium-containing analogs. Reactions of epoxides with zinc chloride almost exclusively gave the corresponding aldehydes.     

Surfactants having polyfluoroalkyl chains. II. Syntheses of anionic surfactants having two polyfluoroalkyl chains including a trifluoromethyl group at each tail and their flocculation-redispersion ability for dispersed magnetite particles in water

Anionic surfactants having two polyfluoroalkyl chains per molecule, i.e. the sodium salt of bis(1H, 1H, 2H,2H-heptadeca-fluorodecyl)-2-sulfosuccinate, CF₃(CF₂)₇(CH₂)₂OCOCH₂CH(SO₃Na)COO(CH₂)₂(CF₂)₇CF₃, the sodium salt of bis(1H, 1H, 2H, 2H-tridecafluoro-octyl)-2-sulfosuccinate, CF₃(CF₂)₅(CH₂)₂OCOCH₂CH(SO₃Na)COO(CH₂)₂(CF₂)₅CF₃, and the sodium salt of bis(1H, 1H, 2H, 2H-nonafluorohexyl)-2-sulfosuccinate, CF₃(CF₂)₃(CH₂)₂OCOCH₂CH(SO₃Na)COO(CH₂)₂(CF₂)₃CF₃, have been prepared from maleic anhydride, the corresponding alcohols possessing a polyfluoroalkyl chain and sodium hydrogen sulfite. The flocculation and redispersion abilities of these surfactants for dispersed magnetic particles in water have been examined to investigate the effect of the chain length. It was found that this ability was enhanced by an increase in the chain length. The contact angles for water for pelleted surface-modified magnetite have been measured. In order to compare this ability and the contact angles, data for other fluorinated surfactant have been obtained. The Kraff point, the surface tension and the pNa of the aqueous surfactant solutions have also been measured.