Synthesis and Structural Characterization of a Silver(I) Pyrazolato Coordination Polymer

Coinage metal(I)···metal(I) interactions are widely of interest in fields such as supramolecular assembly and unique luminescent properties, etc. Only two types of polynuclear silver(I) pyrazolato complexes have been reported, however, and no detailed spectroscopic characterizations have been reported. An unexpected synthetic method yielded a polynuclear silver(I) complex [Ag(μ-L1Clpz)]_n (L1Clpz⁻ = 4-chloride-3,5-diisopropyl-1-pyrazolate anion) by the reaction of {[Ag(μ-L1Clpz)]₃}₂ with (ⁿBu₄N)[Ag(CN)₂]. The obtained structure was compared with the known hexanuclear silver(I) complex {[Ag(μ-L1Clpz)]₃}₂. The Ag···Ag distances in [Ag(μ-L1Clpz)]_n are slightly shorter than twice Bondi’s van der Waals radius, indicating some Ag···Ag argentophilic interactions. Two Ag–N distances in [Ag(μ-L1Clpz)]_n were found: 2.0760(13) and 2.0716(13) Å, and their N–Ag–N bond angles of 180.00(7)° and 179.83(5)° indicate that each silver(I) ion is coordinated by two pyrazolyl nitrogen atoms with an almost linear coordination. Every five pyrazoles point in the same direction to form a 1-D zig-zag structure. Some spectroscopic properties of [Ag(μ-L1Clpz)]_n in the solid-state are different from those of {[Ag(μ-L1Clpz)]₃}₂ (especially in the absorption and emission spectra), presumably attributable to this zig-zag structure having longer but differently arranged intramolecular Ag···Ag interactions of 3.39171(17) Å. This result clearly demonstrates the different physicochemical properties in the solid-state between 1-D coordination polymer and metalacyclic trinuclear (hexanuclear) or tetranuclear silver(I) pyrazolate complexes.     

Pathway Dependence of the Formation and Development of Prefibrillar Aggregates in Insulin B Chain

Amyloid fibrils have been an important subject as they are involved in the development of many amyloidoses and neurodegenerative diseases. The formation of amyloid fibrils is typically initiated by nucleation, whereas its exact mechanisms are largely unknown. With this situation, we have previously identified prefibrillar aggregates in the formation of insulin B chain amyloid fibrils, which have provided an insight into the mechanisms of protein assembly involved in nucleation. Here, we have investigated the formation of insulin B chain amyloid fibrils under different pH conditions to better understand amyloid nucleation mediated by prefibrillar aggregates. The B chain showed strong propensity to form amyloid fibrils over a wide pH range, and prefibrillar aggregates were formed under all examined conditions. In particular, different structures of amyloid fibrils were found at pH 5.2 and pH 8.7, making it possible to compare different pathways. Detailed investigations at pH 5.2 in comparison with those at pH 8.7 have suggested that the evolution of protofibril-like aggregates is a common mechanism. In addition, different processes of evolution of the prefibrillar aggregates have also been identified, suggesting that the nucleation processes diversify depending on the polymorphism of amyloid fibrils.     

Preparation of mesoporous silicas using food grade emulsifiers and its application for enzyme supports

A novel mesoporous silica (TMPS) was synthesized via self-assembly using a myristic acid ester of pentaglycerol. The ester is obtained from catalytic esterification and it is commercially available as a food grade emulsifier. TMPS material was employed for preparation of a biocatalyst in order to examine the ability as an enzyme support in comparison with the other mesoporous silica materials having a channel or a cage-like pore system. The used TMPS materials possessed the interconnected channel-like pore system with the pore sizes of 9.2, 12, and 16 nm. The materials successfully entrapped lipase into their mesopores with the high loadings. The resultant lipase/TMPS conjugates functioned as the biocatalyst for hydrolysis of p-nitrophenyl propionate (p-NPP), having the higher activity than those of the used mesoporous silica conjugates. The high activities were ascribed to the textural properties such as the small particle length, large pore size and the three-dimensional pore connectivity that permit the accessibility of p-NPP to the immobilized lipases during the reactions. Consequently, we concluded that TMPS materials are of the suitable mesoporous support for the enzymes.     

Direct Observation of Fluorescently Labeled Single-stranded λDNA Molecules in a Micro-Flow Channel

We developed two labeling methods for the direct observation of single-stranded DNA (ssDNA), using a ssDNA binding protein and a ssDNA recognition peptide. The first approach involved protein fusion between the 70-kDa ssDNA-binding domain of replication protein A and enhanced yellow fluorescent protein (RPA-YFP). The second method used the ssDNA binding peptide of Escherichia coli RecA labeled with Atto488 (ssBP-488; Atto488-IRMKIGVMFGNPETTTGGNALKFY). The labeled ssλDNA molecules were visualized over time in micro-flow channels. We report substantially different dynamics between these two labeling methods. When ssλDNA molecules were labeled with RPA-YFP, terminally bound fusion proteins were sheared from the free ends of the ssλDNA molecules unless 25-mer oligonucleotides were annealed to the free ends. RPA-YFP-ssλDNA complexes were dissociated by the addition of 0.2 M NaCl, although complex reassembly was possible with injection of additional RPA-YFP. In contrast to the flexible dynamics of RPA-YFP-ssλDNA complexes, the ssBP-488-ssλDNA complexes behaved as rigid rods and were not dissociated even in 2 M NaCl.     

Rhenium-catalyzed regioselective synthesis of multisubstituted pyridines from β-enamino ketones and alkynes via C-C bond cleavage

A new method is described for the regioselective synthesis of multisubstituted pyridine derivatives. Treatment of N-acetyl β-enamino ketones with alkynes in the presence of the rhenium catalyst, Re(2)(CO)(10), gives multisubstituted pyridines regioselectively. In this reaction, the N-acetyl moieties are important for the selective formation of the multisubstituted pyridines. This reaction proceeds via insertion of alkynes into a carbon-carbon single bond of β-enamino ketones, intramolecular nucleophilic cyclization, and elimination of acetic acid.     

Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1

CutA1 is widely found in bacteria, plants and animals, including humans. The functions of CutA1, however, have not been well clarified. It is known that CutA1s from Pyrococcus horikoshii, Thermus thermophilus and Oryza sativa unfold at temperatures remarkably higher than the growth temperatures of the host organisms. In this work the crystal structure of CutA1 from the psychrotrophic bacterium Shewanella sp. SIB1 (SIB1-CutA1) in a trimeric form was determined at 2.7?? resolution. This is the first crystal structure of a psychrotrophic CutA1. The overall structure of SIB1-CutA1 is similar to those of CutA1 from Homo sapiens, Escherichia coli, Pyrococcus horikoshii, Thermus thermophilus, Termotoga maritima, Oryza sativa and Rattus norvergicus. A peculiarity is observed in the β2 strand. The β2 strand is divided into two short β strands, β2a and β2b, in SIB1-CutA1. A thermal denaturation experiment revealed that SIB1-CutA1 does not unfold completely at 363?K at pH 7.0, although Shewanella sp. SIB1 cannot grow at temperatures exceeding 303?K. These results indicate that the trimeric structural motif of CutA1 is the critical factor in its unusually high stability and suggest that CutA1 needs to maintain its high stability in order to function, even in psychrotrophs.     

Three-dimensional snow images by MR microscopy

MR microscopy technique was introduced to visualize and quantify the three-dimensional structure of snowpack. Since the NMR signal from the ice was week, we looked at the air space instead filling with dodecane or aniline doped with iron acetylacetonate. Four types of snow were tested: ice spheres, large rounded poly crystals, small rounded mono-crystals and depth hoar crystals. A specific specimen-cooling system was developed to keep the temperature below 0 degrees C. In the experiments 0.5 to 2 h were necessary to accumulate the signals enough to obtain a 3D micro-image; the image matrix 128(3), voxel size (200 microm)3 or 256(3) (120 microm)3. Comparison with the 2D data using the conventional section plane method was also carried out and MR microscopy is proved to be a very useful method to visualize the microstructure of snowpack.     

Nonlinear rheology of a concentrated spherical silica suspension:

Time-dependent nonlinear flow behavior was investigated for a model hard-sphere suspension, a 50 wt% suspension of spherical silica particles (radius = 40 nm; effective volume fraction = 0.53) in a 2.27/1 (wt/wt) ethylene glycol/glycerol mixture. The suspension had two stress components, the Brownian stress ^B and the hydrodynamic stress ^H After start-up of flow at various shear rates , the viscosity growth function ₊ (t, ) was measured with time t until it reached the steady state. The viscosity decay function _– (t, ) was measured after cessation of flow from the steady as well as transient states. At low where the steady state viscosity ( ) exhibited the shear-thinning, the _– (t, ) and ⁺ (t, ) data were quantitatively described with a BKZ constitutive equation utilizing data for nonlinear relaxation moduli G (t, ). This result enabled us to attribute the thinning behavior to the decrease of the Brownian contribution ^B = ^B / (considered in the BKZ equation through damping of G (t, )). On the other hand, at high where ( ) exhibited the thickening, the BKZ prediction largely deviated from the ₊ (t, ) and ₊ (t, ) data, the latter obtained after cessation of steady flow. This result suggested that the thickening was due to an enhancement of the hydrodynamic contribution ^H = ^H / (not considered in the BKZ equation). However, when the flow was stopped at the transient state and only a small strain (<0.2) was applied, ^H was hardly enhanced and the _– (t, ) data agreed with the BKZ prediction. Correspondingly, the onset of thickening of ₊ (t, ) was characterized with a -insensitive strain ( 0.2). On the basis of these results, the enhancement of ^H (thickening mechanism) was related to dynamic clustering of the particles that took place only when the strain applied through the fast flow was larger than a characteristic strain necessary for close approach/collision of the particles.     

The Effect of Pre-solvation in the Ground State on Photoinduced Electron Transfer in Ionic Liquids

Photoinduced intramolecular charge transfer (CT) dynamics of the asymmetric and symmetric molecules, 4-(9-anthryl)-N,N-dimethylaniline (ADMA) and 9,9′-bianthryl (BA), was investigated by means of time-resolved fluorescence (TRF) spectroscopy and compared with the solvation dynamics of coumarin 153 (C153) in several ionic liquids (ILs). The normalized dynamic Stokes shift (DSS) function for the CT state emission of ADMA in the sub-ns to ns time scale is almost the same as those of BA and C153 in most of the ILs studied, in spite of the much larger Stokes shift of ADMA compared to those of BA and C153. On the other hand, the contribution from ultrafast DSS within 30 ps, which was undetectable with the time resolution in the present study, was estimated to be smaller for BA than that for ADMA. Meanwhile, in phosphonium IL, the DSS in sub-ns to ns time range was solute dependent. This peculiarity in phosphonium IL is discussed from the viewpoint of the hierarchy of the solvation dynamics.