A versatile microfabricated platform for electrophoresis of double- and single-stranded DNA

We demonstrate a versatile microfabricated electrophoresis platform, incorporating arrays of integrated on-chip electrodes, heaters, and temperature sensors. This design allows a range of different sieving gels to be used within the same device to perform separations involving both single- and double-stranded DNA over distances on the order of 1 cm. We use this device to compare linear and cross-linked polyacrylamide, agarose, and thermo-reversible Pluronic-F127 gels on the basis of gel casting ease, reusability, and overall separation performance using a 100 base pair double-stranded DNA ladder as a standard sample. While cross-linked polyacrylamide matrices provide consistently high-quality separations in our system over a wide range of DNA fragment sizes, Pluronic gels also offer compelling advantages in terms of the ability to remove and reload the gel. Agarose gels offer good separation performance, however, additional care must be exercised to ensure consistent gel properties as a consequence of the need for elevated gel loading temperatures. We also demonstrate the use of denaturing cross-linked polyacrylamide gels at concentrations up to 19% to separate single-stranded DNA fragments ranging in size from 18 to 400 bases in length. Primers differing by 4 bases at a read length of 30 bases can be separated with a resolution of 0.9-1.0 in under 20 min. This level of performance is sufficient to conduct a variety of genotyping assays including the rapid detection of single nucleotide polymorphisms (SNPs) in a microfabricated platform. The ability to use a single microelectrophoresis system to satisfy a wide range of separation applications offers molecular biologists an unprecedented level of flexibility in a portable and inexpensive format.     

Thiotropolone as a chromogenic reagent for the simultaneous determination of cobalt(II) and nickel(II)

Thiotropolone forms chloroform-soluble reddish-brown and violet complexes with cobalt(II) and nickel(II), in the pH range 7.0-8.5 and 6.0-9.0 respectively. Based on this, a sensitive and rapid method for the spectrophotometric determination of traces of cobalt and nickel in metals and alloys has been developed. The two metals can be determined accurately in the range 0.6-2.6 ppm of cobalt and 0.75-4.57 ppm of nickel, simultaneously.     

Nucleophilic substitution in certain bicyclic sesquiterpene alcohols under chemical lonization conditions

Substitution of amino for hydroxyl groups in certain sesquiterpene alcohols has been studied by chemical ionization mass spectrometry using ammonia and ammouia-d₃ as the reagent gases, and by mass-analysed ion kinetic energy spectrometry and collision-induced decomposition mass-analysed ion kinetic energy measurements. Depending upon the source conditions and the nature of the substrates, both S_Ni and S_N1 mechanisms have been found to operate. No evidence is obtained for an S_N2 mechanism in these compounds. In centdarol and isocentdarol, addition of NH₃ to the double bond, followed by elimination of H₂O, also contributes to the substitution process. Attack of [NH₄]⁺ on the epoxide function, followed by loss of H₂O, appears to lead to the substitution ions in epoxycentdarol, epoxyisocentdarol and epoxyhimachalol.     

Halogen oxidation and nitrosylation of some aldimine and ketimine carbonyl complexes of chromium and molybdenum

Summary The halogen oxidation and nitrosylation of cis-[(SB)M-(CO)₄] [M = Cr or Mo, SB = N,N-ethylenebis(p-tolualideneimine), N,N-ethylenebis(p-N,N-dimethylaminobenzalideneimine) or N,N-ethylenebis(methyl-p-methoxyphenylketimine); M = Mo, SB = N,N-ethylenebis-(cinnamylideneimine) or N,N-ethylenebis(methyl-p-methylphenylketimine)] have been studied. Halogenation of [(SB)Cr(CO)₄] yielded [(SB)CrX₂] (X = Cl, Br or I) where-as [(SB)Mo(CO)₄] gave [(SB)Mo(CO)₃X₂] (X = Br or I) and [(SB)MoX _x ] (X = I, n = 2; X = Cl or Br, n = 4). NOCl produced [(SB)Cr(NO)₂Cl₂] and [(SB)Mo(CO)₂(NO)Cl] when reacted with the corresponding [(SB)M(CO)₄]. The complexes were characterized by physico-chemical and spectroscopic measurements.     

1,3-dialkyl- and 1,3-diaryl-3,4,5,6-tetrahydropyrimidin-2-ylidene rhodium(i) and palladium(II) complexes: synthesis, structure, and reactivity

The synthesis of novel 1,3-diaryl- and 1,3-dialkylpyrimidin-2-ylidene-based N-heterocyclic carbenes (NHCs) and their rhodium(i) and palladium(II) complexes is described. The rhodium compounds bromo(cod)[1,3-bis(2-propyl)-3,4,5,6-tetrahydropyrimidin-2-ylidene]rhodium (7), bromo(cod)(1,3-dimesityl-3,4,5,6-tetrahydropyrimidin-2-ylidene)rhodium (8) (cod=eta(4)-1,5-cyclooctadiene, mesityl=2,4,6-trimethylphenyl), chloro(cod)(1,3-dimesityl-3,4,5,6-tetrahydropyrimidin-2-ylidene)rhodium (9), and chloro(cod)[1,3-bis(2-propyl)-3,4,5,6-tetrahydropyrimidin-2-ylidene]rhodium (10) were prepared by reaction of [[Rh(cod)Cl](2)] with lithium tert-butoxide followed by addition of 1,3-dimesityl-3,4,5,6-tetrahydropyrimidinium bromide (3), 1,3-dimesityl-3,4,5,6-tetrahydropyrimidinium tetrafluoroborate (4), 1,3-di-2-propyl-3,4,5,6-tetrahydropyrimidinium bromide (6), and 1,3-di-2-propyl-3,4,5,6-tetrahydropyrimidinium tetrafluoroborate, respectively. Complex 7 crystallizes in the monoclinic space group P2(1)/n, and 8 in the monoclinic space group P2(1). Complexes 9 and 10 were used for the synthesis of the corresponding dicarbonyl complexes dicarbonylchloro(1,3-dimesityl-3,4,5,6-tetrahydropyrimidin-2-ylidene)rhodium (11), and dicarbonylchloro[1,3-bis(2-propyl)-3,4,5,6-tetrahydropyrimidin-2-ylidene]rhodium (12). The wavenumbers nu(CO I)/nu(CO II) for 11 and 12 were used as a quantitative measure for the basicity of the NHC ligand. The values of 2062/1976 and 2063/1982 cm(-1), respectively, indicate that the new NHCs are among the most basic cyclic ligands reported so far. Compounds 3 and 6 were additionally converted to the corresponding cationic silver(i) bis-NHC complexes [Ag(1,3-dimesityl-3,4,5,6-tetrahydropyrimidin-2-ylidene)(2)]AgBr(2) (13) and [Ag[1,3-bis(2-propyl)-3,4,5,6-tetrahydropyrimidin-2-ylidene](2)]AgBr(2) (14), which were subsequently used in transmetalation reactions for the synthesis of the corresponding palladium(II) complexes Pd(1,3-dimesityl-3,4,5,6-tetrahydropyrimidin-2-ylidene)(2) (2+)(Ag(2)Br(2)Cl(4) (4-))(1/2) (15) and Pd[1,3-bis(2-propyl)-3,4,5,6-tetrahydropyrimidin-2-ylidene)(2)]Cl(2) (16). Complex 15 crystallizes in the monoclinic space group P2(1)/c, and 16 in the monoclinic space group C(2)/c. The catalytic activity of 15 and 16 in Heck-type reactions was studied in detail. Both compounds are highly active in the coupling of aliphatic and aromatic vinyl compounds with aryl bromides and chlorides with turnover numbers (TONs) up to 2000000. Stabilities of 15 and 16 under Heck-couplings conditions were correlated with their molecular structure. Finally, selected kinetic data for these couplings are presented.     

Complexometric titration of copper(II) using nitrosochromotropic acid as a new metal indicator

Summary Nitrosochromotropic acid gives a violet coloured soluble complex with Cu^II in ammonium chloride-ammonium hydroxide buffer solution, which is less stable than Cu^II-EDTA complex. When microquantities of Cu^II solution containing 1 or 2 drops of nitrosochromotropic acid in the ph range 7.25 to 8.00, are titrated with EDTA, a sharp colour change from violet to orange occurs at the end point. The method of titration can be carried out from 20° to 40° C, but the copper complex dissociates at higher temperature and gives low results. The separation of Zn²⁺, Cd²⁺, Co²⁺, Ni²⁺, Pb²⁺ and alkaline earths, is necessary as they interfere in the titrations with EDTA.

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Zusammenfassung Nitrosochromotropsäure bildet mit Kupfer(II) in Ammoniumchlorid-Ammoniak-Pufferlösung einen violett gefärbten löslichen Komplex, der weniger stabil ist als der Kupfer(II)-ÄDTA-Komplex. Mikromengen Kupfer(II) können imph-Bereich von 7,25–8,00 unter Zusatz von 1–2 Tropfen Nitrosochromotropsäurelösung als Indicator mit ÄDTA-Lösung titriert werden, wobei am Endpunkt ein scharfer Umschlag von Violett nach Orange erfolgt. Die Temperatur der Lösung soll 20–40° C betragen; bei höherer Temperatur erhält man zu niedrige Werte, da der Kupferkomplex dann dissoziiert. Zn²⁺, Cd²⁺, Co²⁺, Ni²⁺, Pb²⁺ und Erdalkalien müssen vor der Titration abgetrennt werden.

     

Synthesis of TiO2 nanoparticles on the Au(111) surface

The growth of titanium oxide nanoparticles on reconstructed Au(111) was investigated by scanning tunneling microscopy and x-ray photoelectron spectroscopy. Ti was deposited by physical-vapor deposition at 300 K. Regular arrays of titanium nanoparticles form by preferential nucleation of Ti at the elbow sites of the herringbone reconstruction. The titanium oxide nanoclusters were synthesized by subsequent exposure to O(2) at 300 K. Two-and three-dimensional titanium oxide nanocrystallites form during annealing in the temperature range from 600 to 900 K. At the same time, the Au(111) surface assumes a serrated 110-oriented step-edge morphology suggesting step-edge pinning by titanium oxide nanoparticles. The oxidation state of the titanium oxide nanoparticles varies with annealing temperature. Specifically, annealing to 900 K results in the formation of stoichiometric TiO(2) nanocrystals as judged by the Ti(2p) binding energies measured in the x-ray photoelectron data. The nanodispersed TiO(2) on Au(111) is an ideal system to test the various models proposed for the enhanced catalytic reactivity of supported Au nanoparticles.     

Polymerization initiated by ylide: Polymerization of ethyl methacrylate with the use of 4-picolinium p-chloro phenacylide as initiator

The ylide 4-picolinium, p-chloro phenacylide-initiated thermal polymerization of ethyl methacrylate (EMA) was studied. 4-Picolinium p-chloro phenacylide induces the thermal polymerization of ethyl methacrylate at 65°C. The rate of polymerization (R_p) rose as the initiator concentration increased from 2 × 10^?3 to 4 × 10^?3 M and the initiating exponent was computed as 1.9. The R_p decreased as the concentration of ylide increased from 6 × 10^?2 to 1M. The greater initiator concentration also affected the molecular weight inversely. The polymerization was carried out at different temperatures and the overall activation energy was computed as 4.08 Kcal/mol. Polymerization was inhibited in the presence of hydroquinone as a radical scavenger. Kinetic studies and other data show that the overall polymerization takes place in a radical mechanism. The various kinetic parameters, such as the rate and average degree of polymerization, molecular weight, and energy of activation of the present system, were evaluated.     

Use of FTIR spectroscopy in the investigation of catalytic reactions in zeolites—Possibilities and limitations

FTIR-spectroscopic investigations of catalytic reactions yield detailed information about the interaction of adsorbed molecules with the catalyst and kinetic data of the surface reaction, if the participating molecules show vibrations whose position and intensity in the IR-spectrum depend on the sorption state and the quantity adsorbed. In this paper, the possibilities and limitations of the method are represented by two examples.     

Thermal studies on copper(II)-5,5′-thiodisalicylic acid complexes

Aquo, ammonia and pyridine complexes of copper(II) with 5,5-thiodisalicylic acid have been investigated by TG and DTG. All these complexes decompose in three distinct steps, viz. dehydration, loss of axial bases and decarboxylation of the aromatic ligand. The thermal curves of the aquo and pyridine complexes show water loss in two distinct steps. The decreasing order of thermal stability of the complexes is py > NH₃ > H₂O.

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Zusammenfassung Aquo-, Ammoniak- und Pyridinkomplexe von Kupfer(II) mit 5,5-Thiodisalicylsäure wurden durch TG und DTG untersucht. Diese Komplexe werden in den drei Stufen, Dehydratisierung, Verlust axialer Basen und Decarboxylierung des aromatischen Liganden zersetzt. Die Abbaukurven der Aquo- und Pyridinkomplexe zeigen einen Wasserverlust in zwei Stufen. Die abnehmende Reihenfolge der Thermostabilität der Komplexe ist py > NH₃ > H₂O.

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, (II) 5,5- . , : , . - , . : > NH₃ > ₂.