Acid-base properties of xanthosine 5'-monophosphate (XMP) and of some related nucleobase derivatives in aqueous solution: micro acidity constant evaluations of the (N1)H versus the (N3)H deprotonation ambiguity

The first acidity constant of fully protonated xanthosine 5'-monophosphate, that is, of H3(XMP)+, was estimated by means of a micro acidity constant scheme and the following three deprotonations of the H2(XMP)+/- (pKa=0.97), H(XMP)- (5.30), and XMP2- (6.45) species were determined by potentiometric pH titrations; further deprotonation of (XMP-H)3- is possible only with pKa>12. The most important results are that the xanthine residue is deprotonated before the P(O)2(OH)- group loses its final proton; that is, twofold negatively charged XMP carries one negative charge in the pyrimidine ring and one at the phosphate group. Micro acidity constant evaluations reveal that this latter mentioned species occurs with a formation degree of 88 %, whereas its tautomer with a neutral xanthine moiety and a PO3(2-) group is formed only to 12 %; this distinguishes XMP from its related nucleoside 5'-monophosphates, like guanosine 5'-monophosphate. At the physiological pH of about 7.5 mainly (XMP-H)3- exists. The question, which of the purine sites, (N1)H or (N3)H, is deprotonated in this species cannot be answered unequivocally, though it appears that the (N3)H site is more acidic. By application of several methylated xanthine species intrinsic micro acidity constants are calculated and it is shown that, for example, for 7-methylxanthine the N1-deprotonated tautomer occurs with a formation degree of about 5 %; a small but significant amount that, as is discussed, may possibly be enhanced by metal ion coordination to N7, which is known to occur preferably to this site.     

Hygrometric Determination of Water Activities, Osmotic and Activity Coefficients, and Excess Gibbs Energy of the System MgSO4–K2SO4–H2O

Ternary aqueous solutions of MgSO₄ and K₂SO₄ have been studied by the hygrometric method at 25°C. The relative humidity of this system is measured at total molalities from 0.35 mol-kg^–1 to about saturation for three ionic-strength fractions (y = 0.25, 0.50, and 0.80 of MgSO₄. The data allow calculation of water activities and osmotic coefficients. From these measurements, the Pitzer ionic mixing parameters are determined and used to predict the solute activity coefficients in the mixture. The results are used to calculate the excess Gibbs energy at total molalities for ionic-strength fraction y.     

(m‐CH3C6H4NH3)6P6O18

In hexakis(m‐toluidinium) cyclo­hexaphosphate, 6C₇H₁₀N⁺·­P₆O₁₈^6?, the atomic arrangement is typical of a layer structure. Layers including the centrosymmetric P₆O₁₈ ring anions develop around the (100) planes at x = . The hydrogen‐bond distribution is described.     

Rotenoid and isoflavone metabolites from an antioxidant seed extract of Dalbergia lanceolaria subsp. paniculata (roxb.) thoth

Abstract

A new rotenoid named 12-O-methylrotenolol along with five known rotenoid and isoflavone metabolites were isolated from the seeds of Dalbergia lanceolaria subsp. paniculata, collected from Egypt. The structures of these compounds were identified by physical and spectroscopic data measurements ([α]_D, UV, 1D- and 2D-NMR and MS). The methanol extract of the seeds exhibited strong antioxidant activity with IC₅₀ value 0.7?µg/µl against DPPH radical, in respect to quercetin as antioxidant reference (IC₅₀ 1.5?μM), while the tested compounds from this extract showed weak activities with IC₅₀ values ranged from 19.6 to 33.0?µM.     

Quartz crystal microbalance (QCM) in high-pressure carbon dioxide (CO2): experimental aspects of QCM theory and CO2 adsorption

The quartz crystal microbalance (QCM) technique has been developed into a powerful tool for the study of solid-fluid interfaces. This study focuses on the applications of QCM in high-pressure carbon dioxide (CO2) systems. Frequency responses of six QCM crystals with different electrode materials (silver or gold) and roughness values were determined in helium, nitrogen, and carbon dioxide at 35-40 degrees C and at elevated pressures up to 3200 psi. The goal is to experimentally examine the applicability of the traditional QCM theory in high-pressure systems and determine the adsorption of CO2 on the metal surfaces. A new QCM calculation approach was formulated to consider the surface roughness contribution to the frequency shift. It was found that the frequency-roughness correlation factor, Cr, in the new model was critical to the accurate calculation of mass changes on the crystal surface. Experiments and calculations demonstrated that the adsorption (or condensation) of gaseous and supercritical CO2 onto the silver and gold surfaces was as high as 3.6 microg cm(-2) at 40 degrees C when the CO2 densities are lower than 0.85 g cm(-3). The utilization of QCM crystals with different roughness in determining the adsorption of CO2 is also discussed.     

Synthesis, Characterization, Luminescence, and Electrochemistry of New Tetranuclear Gold(I) Amidinate Clusters: Au4[PhNC(Ph)NPh]4, Au4[PhNC(CH3)NPh]4, and Au4[ArNC(H)NAr]4

The syntheses and the X-ray structures of the tetranuclear gold(I) benzamidinate, Au₄[PhNC(Ph)NPh]₄, and the tetranuclear gold(I) acetamidinate, Au₄[PhNC(CH₃)NPh]₄, clusters are reported. The clusters are produced by the reaction of the sodium salt of an amidine ligand with the gold precursor Au(THT)Cl in a (1:1) stoichiometry. The average Au...Au distance between adjacent Au(I) atoms is ∼2.9 ?, typical of compounds having an aurophilic interaction. The four gold atoms are arranged in a square (Au...Au...Au... = 88–91°) in the acetamidinate and in a distorted square (Au...Au...Au... = 82–97°) in the benzamidinate derivative. Electrochemical oxidation of the tetranuclear complex Au₄[PhNC(Ph)NPh]₄ show three reversible waves at 0.87, 1.19, 1.42 V vs. Ag/AgCl at a scan rate of 100 mV/s in CH₂Cl₂ similar to the three reversible waves seen before from the tetranuclear complexes Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, Ar = C₆H₄-4-Me, and Ar = C₆H₃-3,5-Cl. A summary of the chemistry of the tetranuclear Au(I) amidinate complexes Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, C₆H₃-3,5-Cl, C₆H₄-4-Me, C₆H₄-3-CF₃, C₆F₅, C₁₀H₇ also is presented. The tetranuclear clusters Au₄[ArNC(H)NAr]₄, Ar = C₆H₄-4-OMe, Ar = C₆H₄-3-CF₃, Ar = C₆H₄-4-Me and Ar = C₆H₄-3,5-Cl are the first tetranuclear gold(I) cluster species from group 11 elements to show fluorescence at room temperature. The lifetimes of the naphthyl and trifluoromethylphenyl complexes are in the millisecond range indicating phosphorescent processes. Recently it has been shown that Au₄[ArNC(H)NAr]₄ are very effective catalysts upon calcination for room temperature CO oxidation. Congratulations to Dieter Fenske, a superb synthetic chemist with exceptional talents in cluster chemistry, on the occasion of his 65th birthday.     

The phenomenon of conglomerate crystallization. Part 40: The crystallization behavior oftrans- Co(III) amines (+)546-trans-[Co(3,2,3-tet)(NO2)2]Cl·3H2O (I), (−)589 -trans-[Co(3,2,3-tet)Cl2]NO3 (II), and of (+)546-trans-[Co(3,2,3-tet)(NO2)2]NO3 (III)

A racemic solution of (I) crystallizes as a conglomerate from which a crystal we selected was found to be (+)₅₄₆-trans-[Co(3,2,3-tet)(NO₂)₂]Cl·3H₂O (I), CoClO₇N₆C₈H₂₈. It crystallizes in the enantiomorphic space groupP2_l2_l2_l, with lattice constantsa=18.501(15) å,b=14.433(2) å, andc=6.441(3) å;V=1720.07 å³ andd(calc. M.W.=414.73,Z=4)=1.601 g cm^?3. A total of 2305 data were collected over the range of 4?≤2θ ≤55?; of these, 1724 (independent and withI > 3σ(I)) were used in the structural analysis. Data were corrected for absorption (Μ=11.920 cm^?1), and the relative transmission coefficients ranged from 0.8258 to 0.9565. Refinement was carried out for both lattice enantiomorphs, and at this stage theR(F) andR _w (F) residuals were, respectively, 0.0381 and 0.0479 for (+ + +) and 0.0448 and 0.0532 for (? ? ?). Thus, the former was selected as correct for our specimen, and the final cycle of refinement with the (+ + +) model converged toR(F) andR _w (F) of 0.0315 and 0.0365. A racemic solution of (II) crystallizes as a conglomerate from which a crystal we selected was found to be (?)₅₈₉-trans-[Co(3,2,3-tet)Cl₂]NO₃ (II), CoCl₂O₃N₅C₈H₂₂. It crystallizes in the enantiomorphic space groujp,P2_l with lattice constantsa=6.395(2) å,b=8.886(2) å,c=13.185(2) å, andΒ=99.24(2)?;V=739.59 å³ andd(calc. M.W.=366.14,Z=2)=1.646 g cm ^?3. A total of 2912 data were collected over the range of 4?<2θ<64?; of these, 2147 (independent and withI≥3σ(I)) were used in the structural analysis. Data were corrected for absorption (Μ =15.424 cm^?1), and the relative transmission coefficients ranged from 0.9632 to 0.9985. Refinement was carried out for both lattice enantiomorphs, and the finalR(F) andR _w (F) residuals were, respectively, 0.0326 and 0.0328 for (+ + +) and 0.0347 and 0.0348 for (? ? ?). Thus, the (+ + +) was selected as correct for our specimen. A racemic solution of (III) crystallizes as a conglomerate from which a crystal we selected was found to be (+)₅₈₉-trans-[Co(3,2,3-tet)(NO₂)₂]NO₃ (III), CoO₇N₇C₈H₂₂. It crystallizes in the enantiomorphic space group,P2_l with lattice constantsa=6.295(1) å, b=15.108(3) å,c=8.029(1) å, andΒ=100.28(2)?;V=751.35 å³ andd(calc. M.W.=387.24,Z=2)=1.712 g cm^?3. A total of 2393 data were collected over the range of 4?≤2θ≤60?; of these, 1869 (independent and withI≥3σ(I)) were used in the structural analysis. Data were corrected for absorption (Μ=11.859 cm^?1), and the relative transmission coefficients ranged from 0.8814 to 0.9976. Refinement was carried out for both lattice enantiomorphs and the finalR(F) andR _w (F) residuals were, respectively, 0.0463 and 0.0482 for (+ + +) and 0.0441 and 0.0442 for (? ? ?). Thus, the latter was selected as correct for our specimen, and the final cycle of refinement with the (? ? ?) model converged toR(F) andR _w (F) of 0.0436 and 0.0421. For all three compounds, the six-membered rings are chairs; the secondary nitrogens are chiral centers, and the five-membered rings are ordered and conformationally dissymmetric, as expected. Coincidentally, in (I), (II), and (III) the central rings are right-handed helices withδ(+50.0?),δ(+53.3?), andδ(+48.3?), respectively. Thus, the secondary nitrogens of all three cations are (R), rendering the cations chiral. The incidence of conglomerate crystallization intrans coordination compounds is rare, and those known are asymmetrically substituted (see Ref. 4 for the four known cases). Thus, the incidence of such crystallization mode in a new series of [trans- Co(amine ligands)X₂]⁺ cations bearing symmetrical pairs oftrans ligands was an unexpected and welcomed event. In all three cases, the counteranions are bonded to the hydrogens of the terminal -NH₂ moieties, thus forming an overall entity which resembles a macrocycle. In fact, parallels between the crystallization behavior of our compounds and that of macrocycles bearing related fragments is discussed. Finally, in the three compounds, homochiral cations are linked into infinite strings by hydrogen bonds between the axial ligands and amino hydrogens on adjacent cations of the string. In turn, strings are stitched together by the counteranions which form bonds with amino hydrogens on cations of adjacent strings.     

Three-stage sequential extraction procedure for metal partitioning in polluted soils and sediments

The sequential extraction procedure proposed by the Standard, Measurements and Testing program "SM&T" of the European Union has been applied to evaluate the amounts of Cr, Cu, Mn, Ni, Pb and Zn, extracted at each stage and indirectly their mobility and bioavailability in soil and sediment samples from a polluted area. Analysis of the extracts was carried out by flame atomic absorption spectrometry (FAAS). No significant matrix interferences were found except for Cr in the acetic acid and hydroxylammonium chloride extracts, which required determination by the standard additions method. Both of soils and sediments studied show similar partitioning of Mn, Ni, Cu and Cr. Mn and Ni can be considered to have significant component bound to the acido-soluble fraction, whereas, Cr and Cu occur largely in the organic and residual phases. The partitioning of Pb and Zn was different between soil and sediment. In terms of mobility and bioavailability, in soils, Ni and Mn can be regarded as moderately available followed by a lower availability of Pb while Cu, Zn and Cr have a very limited availability. In sediments, a higher availability (short-medium term) of Mn and Zn was presumed followed by a lower availability of Ni and Pb, whereas, Cu and Cr, occurring largely in the organic and residual phases, were of very limited availability.     

Reactions with heterocyclic amidines. VI. Synthesis and chemistry of pyrazol-5-yl,and 1,2,4-triazol-5-ylhydrazonyl chlorides

The 4-bromo-3-phenylpyrazol-5-ylhydrazonyl chlorides (Ia,b) and 1,2,4-triazol-5-ylhydrazonyl chlorides (IIa,b) were prepared via coupling of diazotized 4-bromo-3-phenyl-5-aminopyrazole (III) and 5-amino-1,2,4-triazole (IV) with α-chloro derivatives of acetylacetone and of ethyl aceto-acetate. Compounds Ia and IIa,b were utilised for the synthesis of several new heterocyclic derivatives.     

The spectrophotometric and titrimetric determination of gold with ferroin as reagent

A spectrophotometric and a photometric titration method in a two-phase system for the determination of gold with ferroin is reported. Both methods are rapid and reproducible with an accuracy of ±1%. In the spectrophotometric determination Co²⁺, Cu²⁺, Ni²⁺ , Fe³⁺, Zn²⁺, Mn²⁺ and Cr³⁺ do not interfere with the determination of gold and Pt⁴⁺, Pd²⁺, Hg²⁺, Ir⁴⁺ and Os⁴⁺ can be tolerated up to a ratio of 1:1. The titrations can also be carried out in the presence of a number of diverse ions, e.g. Ni²⁺, Cu²⁺, Co²⁺, Fe³⁺, Zn²⁺, Cr³⁺, Mn²⁺, without interference; the platinum metals and Hg²⁺ cause interference but, by the use of the spectrophotometric procedure, this can be reduced.