Quantum coherence in quantum dot—Aharonov–Bohm ring hybrid systems

We investigate coherent transport through hybrid systems of quantum dots and Aharonov–Bohm (AB) rings. Strong coherence over the entire system leads to the Fano effect, which originates from the interference and the phase shift caused by the discrete states in the dots. The high controllability of the system parameters reveals that the Fano effect in mesoscopic transport can be a powerful tool for detecting the phase shift of electrons. We apply it to detect electrostatic phase modulation and the phase shift in a quantum wire with a side-coupled dot. Finally, we provide an experimental answer to the problem of “neighboring in-phase Coulomb peaks”.     

Fabrication of novel layer-by-layer assembly films composed of poly(lactic acid) and polylysine through cation-dipole interactions

Novel layer-by-layer (LbL) assembly films composed of poly( L-lysine) (PLL) and poly( D-lactic acid) (PDLA) were prepared by the alternate immersion of a gold substrate into an aqueous PLL solution and an acetonitrile solution of PDLA. The formation of the LbL assembly film was confirmed by quartz crystal microbalance (QCM) analysis, atomic force microscopy observation, and attenuated total reflection Fourier transform infrared spectroscopy measurement. The driving force responsible for the LbL assembly was determined by investigating the formation behavior of the LbL assembly under various conditions. The formation of the LbL assembly was not affected either by the stereochemistry of polylysine and poly(lactic acid) or by the addition of urea, which is known to inhibit hydrogen bonding interaction between polymers, into the aqueous PLL solution. The LbL assembly was also formed by the combination of PDLA and polycations other than polylysine, such as poly(diallyldimethylammonium chloride). On the other hand, the combination of PDLA and any polyanions such as poly(styrene sulfonate sodium salt) produced little corresponding LbL assembly. The increase in positive charge on the amino nitrogen atom of PLL enhanced the LbL assembly. These results suggest that the LbL assembly film composed of PLL and PDLA was fabricated by cation-dipole interactions between the positive charge on the amino nitrogen atom of PLL and the lone pairs of the carbonyl oxygen atom of PDLA.     

HELFIT: Helix fitting by a total least squares method

The problem of fitting a helix to data arises in analysis of protein structure, in nuclear physics, and in engineering. A continuous helix is described by five parameters: helix axis, helix radius, and helix pitch. One of these helix parameters is frequently predefined in the helix fitting. Other algorithms find only the helix axis or determine separately the helix axis, the helix radius, or the helix pitch. Here we describe a total least squares method, HELFIT, for helix fitting. HELFIT enables one to calculate simultaneously all five of the helix parameters with high accuracy. The minimum number of data points required for the analysis is only four. HELFIT is very insensitive to noise even in short helices. HELFIT also calculates a parameter, p = rmsd/(N − 1)^1/2, which estimates the regularity of helical structures independent of the number of data points, where rmsd is the root mean square distance from the best-fit helix to data points and N is the number of data points. It should become a basic tool of structural bioinformatics.     

Preparation and properties of anionic transition metal complexes containing triheterocarbenium ions

Summary Thermally stable anionic tetracarbonylcobalt complexes containing triheterocarbenium ions, [Co(CO)₄]^–[cation]⁺, have been synthesized by the ion exchange reaction of [Co(CO)₄]^–PPN⁺ with the corresponding carbenium ions. Similar molybdenum complexes containing cyclopentadienyl and carbonyl ligands were also prepared. The complexes were characterized by elemental analyses and by i.r. and n.m.r. spectroscopies. The ionic structures of the complexes are confirmed on the basis of their large electric conductivities.     

Layer-by-layer assembly of partially sulfonated isotactic polystyrene with poly(vinylamine)

The stereoregular synthetic polymer isotactic polystyrene bearing partially sulfonated groups (SiPS) was used as a layer-by-layer assembled thin film for the first time. When a low molecular weight compound was employed as the pair for the alternative layer-by-layer (LbL) assembly, the frequency shift was very small using quartz crystal microbalance (QCM) analysis, whereas poly(vinylamine) (PVAm) formed an effective pair for the construction of LbL films with SiPS. When it was neutralized, SiPS was not assembled, probably due to the loss of effective polymer-polymer interactions. The ionic strength conditions revealed a slight difference of the assembly behavior on the isotactic polymer as compared to the atactic one. The assembled LbL film showed the same peaks over the range from 1141 to 1227 cm(-1) and 700 cm(-1) in the FT-IR/ATR spectra as the bulk complex of SiPS/PVAm, and the thickness on one side was calculated at 76 nm by QCM analysis. The surface roughness of the film was also observed by AFM.     

Effects of magnesium salts and amines on the stereoselectivity in the imine aldol reaction

In the imine aldol reactions of 1 with aromatic aldehydes using magnesium salts in the presence of amines, the threo/erythro ratios of products increased in the order Mg(ClO4)2>MgI2>MgBr2>MgCl2>Mg(OTf)2 and N,N,N',N'-tetramethylethylenediamine (TMEDA)>Et3N. This increase in the threo/erythro ratios of products was estimated to be caused by a retro-imine aldol reaction under thermodynamic control.     

Total Synthesis of the Nonribosomal Peptide Surugamide B and Identification of a New Offloading Cyclase Family

The cathepsin B inhibitor surugamide B ( 2 ), along with structurally related derivatives (A and C–E), has previously been isolated from the marine actinomycete Streptomyces sp. JAMM992. The biosynthetic genes are unexpectedly part of a cluster of four non‐ribosomal peptide synthetase (NRPS) genes, two of which are responsible for the biosynthesis of the additional linear decapeptide surugamide F. However, the thioesterase domain required for the later stage of the biosynthesis of the cyclic peptides surugamides A–E is not present in any module architecture of the surugamide NRPSs. Herein, we report the first total synthesis of surugamide B ( 2 ) through the macrocyclization at the biomimetic position, which not only alleviated the Cα epimerization in the macrolactamization process, but also efficiently provided 2 in 34 % yield for 18 steps. Furthermore, both the chemical and enzymatic studies with the biosynthetic precursor mimics revealed that the stand‐alone enzyme SurE, which belongs to the penicillin‐binding protein family, is responsible for macrocyclization of the tethered octapeptidyl intermediate.     

Formation and Characterization of Reversed Micelles Composed of Phospholipids and Fatty Acids

The formation of reversed micellar systems composed of phosphatidylcholine (PC) and fatty acid was newly demonstrated by a significant increase in water content in the organic ethyl oleate phase when the micelles were prepared by the contact method. The solubilized water concentration in the reversed micellar organic phase reached 3 wt%. The new systems are expected to be used as highly biocompatible reversed micellar systems. The structure of the reversed micelles composed of PC and oleic acid was characterized by determining the water concentration and by small-angle X-ray scattering analysis. The reversed micelles composed of PC and oleic acid formed in ethyl oleate were spherical. The radius of gyration was between 30 and 50 Å. The size of the reversed micelles decreased with an increase in the oleic acid concentration and was independent of the PC concentration. Experimental results indicated that the structure of the reversed micellar system was determined by the oleic acid concentration. An increase in the PC concentration caused an increase in the number of reversed micelles of the same size. These reversed micellar systems are expected to be used as solubilization media in pharmaceutical and food industries because they are not toxic.