Conformational studies on peptides having chiral five-membered ring amino acid with two azido or triazole functional groups within the sequence of Aib residues

The chiral cyclic α,α-disubstituted α-amino acid, (3R,4R)-1-amino-3,4-diazido-1-cyclopentanecarboxylic acid [(R,R)-Ac₅c^dN3], was introduced into achiral α-aminoisobutyric acid (Aib) peptides. The azido groups of (R,R)-Ac₅c^dN3 in the peptides were efficiently converted into 1,2,3-triazole functional groups. FTIR, ¹H NMR, and CD spectra revealed that the dominant conformations of all peptides in solution were 3₁₀-helical structures without controlling the helical-screw sense. X-ray crystallographic analyses of peptides containing (R,R)-Ac₅c^dN3 showed that both the right-handed (P) and left-handed (M) 3₁₀-helical structures were present in the crystal state.     

cis,cis‐Ceratospong­amide N,N‐di­methyl­acet­amide hemisolvate in the presence of twinning

Ceratospong­amide (CS) is a potent inhibitor of secreted phospho­lipase A₂, and cis,cis and trans,trans isomers, related with respect to the two proline amide bonds, are known. Crystals of cis,cis‐CS were grown from N,N‐di­methyl­acet­amide solution, giving the title compound, the cyclic ester of isoleucyl­oxazolinyl­phenyl­alanyl­prolyl­thia­zolyl­phenyl­alanyl­pro­line [cyclo(‐Ile–Oxz–Phe–Pro–Thz–Phe–Pro‐)] N,N‐di­methyl­acet­amide hemisolvate, C₄₁H₄₉N₇O₆S·0.5C₄H₉NO. The structure is the third example of cis,cis‐CS to be investigated and comprises twinned crystals, in which the a and b axes are interchanged. The ratio of co‐existing twin crystals is approximately 50%. The peptide has a `saddle‐like' structure and is very similar to previously reported structures of cis,cis‐CS, which implies that the structure of cis,cis‐CS is very stable in spite of differences in crystallization conditions.     

cyclo(‐Cha–Oxz–d‐Val–Thz–Ile–Oxz–d‐Val–Thz‐) N,N‐di­methyl­acetamide dihydrate: a square form of cyclo­hexyl­alanine‐incorporated ascidiacycl­amide having the strongest cytotoxicity

The title compound, 1‐cyclo­hexyl­methyl‐1‐de(1‐methyl­propyl)­asci­dia­cycl­amide N,N‐di­methyl­acet­amide di­hy­drate, C₃₉H₅₆N₈O₆S₂·C₄H₉NO·2H₂O, a cyclo­hexyl­alanine‐incorporated ascidiacycl­amide analogue ([Cha]ASC), shows a square form similar to natural ASC. On the other hand, CD (circular dichroism) spectra showed [Cha]ASC to have a folded structure in solution, making it the second known analogue to show a discrepancy between its crystal and solution structures. Moreover, the cytotoxicity of [Cha]ASC (ED₅₀ = 5.6 µg ml⁻¹) was approximately two times stronger than that of natural ASC or a related phenyl­alanine‐incorporated analogue, viz. cyclo(‐Phe–Oxz–d ‐Val–Thz–Ile–Oxz–d ‐Val–Thz‐) ([Phe]ASC), and was confirmed to be associated with the square form. However, [Phe]ASC was previously shown to be folded in the crystal structure, which suggests that the difference between the aromatic and aliphatic rings affects the molecular folding of the ASC mol­ecule.     

DNA-templated assembly of naphthalenediimide arrays

π-Stacked naphthalenediimide (NDI) arrays are of interest as charge-transport materials. We have designed and synthesized an NDI derivative with two Zn(II)-cyclens that act as receptors for the thymine base in DNA. UV/Vis and CD spectroscopy, gel filtration, and molecular-modeling studies have shown that the bis(Zn(II)-cyclen)-NDI can be assembled in the presence of oligo-dT to form π-stacked NDI arrays. The assembly of the NDI arrays was found to be dependent on the length of the oligo-dT and the temperature. The NDI-oligo-dT assembly on a gold substrate exhibits photocurrent responses due to electron transfer through the π-stacked array.     

Fabrication of platy apatite nanocrystals loaded with TiO2 nanoparticles by two-step emulsion method and their photocatalytic activity

Nanometer-sized TiO(2) island structure on the platy hydroxyapatite nanocrystals (HAp) has been accomplished by two-step emulsion process. At the first step, platy HAp nanocrystals, of which size was in the range of 70-200 nm after heat-treatment at 1078 K for 1 h, were prepared using the W/O emulsion system. Before the second step, HAp nanocrystals were immersed in NaH(2)PO(4) solution for the formation of hydroxyl group on their surface. In the following, titanium tetraisopropoxide reacted with the hydroxyl group of HAp surface to form TiO(2) nanoparticles on the surface of HAp nanocrystals, which were dispersed in the micrometer-sized methanol droplets of polyethylene cetylether-cyclohexane mixture (methanol/oil emulsion). The resulting hydroxyapatite nanocrystals loaded with TiO(2) nanoparticles showed the high photocatalytic activity comparing to the commercial TiO(2) catalyst.     

KNI-272, a highly selective and potent peptidic HIV protease inhibitor

Kynostatin {KNI-272; systematic name: 3-[3-benzyl-2-hydroxy-9-(isoquinolin-5-yl­oxy)-6-methyl­sulfanyl­methyl-5,8-dioxo-4,7-di­aza­nonanoyl]-N-tert-butyl-1,3-thia­zolane-4-carbox­amide}, a highly selective and potent HIV protease inhibitor containing allo­phenyl­norstatin [(2S,3S)-3-amino-2-hydroxy-4-phenyl­butyric acid], has been crystallized as the hydrate, C₃₃H₄₁N₅O₆S₂·0.803H₂O, from aqueous hexyl­ene glycol. The observed disorder of the phenyl group in the structure is related to the mode of hydration. The backbone conformation of the mol­ecule is twisted and the overall conformation of the free inhibitor is similar to that observed in its complex with HIV protease.     

Pyrene-zipper array assembled via RNA duplex formation

We describe a new strategy for multipyrene modification of RNA sequences to form unique structures of pyrene aromatic arrays, the "pyrene-zipper array", on duplex RNA that exhibits remarkably strong excimer fluorescence.     

Tapered hollow waveguide for focusing infrared laser beams

A tapered hollow waveguide that can focus a laser beam into a small beam spot is proposed for medical and dental applications. We fabricated hollow tapered optics by using a traveling torch, and the shape was formed as a precise linear taper. For a hollow taper tip with input and output diameters of 700 and 200 microm, respectively, the insertion loss is as small as 0.7 dB in a 10 mm long taper. The hollow taper optic producing a 200 microm spot withstands input energy of 100 mJ. Because a focusing lens is unnecessary at the output end, the laser beam can be introduced into a deep and narrow spot with these tapered optics.