Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5)

Parallel G-quadruplexes formed from oligonucleotide sequences, d(TTAGn), where n = 3-5, have been shown to form a dimer through end-to-end stacking of 3'-terminal G-tetrads. The monomers and dimers of the G-quadruplexes are in dynamic equilibrium with an exchange rate of approximately 1 s-1. A thermodynamic study demonstrated that the dimerization of the G-quadruplexes is largely enthalpic in origin.     

Endo- and aminopeptidase activities of rat cathepsin H.

Employing soluble denatured protein substrates and their derivatives, the proteolytic activity of rat cathepsin H was investigated. The enzyme showed aminopeptidase activity which sequentially released amino acid from the N-terminal of the substrate. The aminopeptidase activity did not act on N alpha-acetylated peptides and showed moderate ionic-strength dependence when methionyl-methylcoumarylamide was employed as a substrate. These results indicate that the activity essentially requires an N-terminal free amino group of the substrate and recognizes it electrostatically to some extent. On the other hand, the enzyme was also indicated to exhibit endopeptidase activity by employing appropriate N alpha-acetylated peptide substrates. In contrast to the aminopeptidase activity, the endopeptidase activity showed rather strict specificity, preferring hydrophobic residues at P2 and P3 sites. Because of the broad specificity and high efficiency of the aminopeptidase activity, it was difficult to directly observe endopeptidase activity in the digestion of large peptide substrates with a free alpha-amino terminal. Thus, this is the first experimental evidence that indicates endopeptidase activity by assigning internal peptide bonds cleaved by this activity. From this data, we proposed a model of the binding site of this enzyme.     

Cationic polymerization behavior of hydroxystyrenes

Solution polymerizations of o-, m- and p-hydroxystyrene with boron trifluoride etherate were investigated. The results of infrared and ultraviolet spectroscopic investigations of the polymers thus obtained indicate that p-hydroxystyrene polymer consisted mainly of the structure formed through the normal vinyl polymerization mechanism, whereas o- and m-hydroxystyrene polymers contained considerable portions of the structures due to the reaction of the vinyl group with the phenol nucleus. The rate of polymerization and the intrinsic viscosity of the polymer decreased in the order p-hydroxystyrene ? o-hydroxystyrene > m-hydroxystyrene. It was of interest that on the cationic polymerization only p-hydroxystyrene gave polymer of high molecular weight. Plausible polymerization mechanisms were considered. Solid-state polymerization of p-hydroxystyrene at solid carbon dioxide temperature with the use of boron trifluoride etherate was also investigated. Appreciable polymerization occurred only at fairly high catalyst concentrations.     

Gas-phase reactions of organic radicals and diradicals with ions

Reactions of polyatomic organic radicals with gas phase ions have been studied at thermal energy using a flowing afterglow-selected ion flow tube (FA-SIFT) instrument. A supersonic pyrolysis nozzle produces allyl radical (CH2CHCH2) and ortho-benzyne diradical (o-C6H4) for reaction with ions. We have observed: [CH2CHCH2 + H3O+ --> C3H6+ + H2O], [CH2CHCH2 + HO- --> no ion products], [o-C6H4 + H3O+ --> C6H5+ + H2O], and [o-C6H4 + HO- --> C6H3- + H2O]. The proton transfer reactions with H3O+ occur at nearly every collision (kII approximately with 10(-9) cm3 s(-1)). The exothermic proton abstraction for o-C6H4 + HO- is unexpectedly slow (kII approximately with 10(-10) cm3 s(-1)). This has been rationalized by competing associative detachment: o-C6H4 + HO- --> C6H5O + e-. The allyl + HO- reaction proceeds presumably via similar detachment pathways.     

Dependence of phase behavior of some non-ionic surfactants at the air-water interface on micellization in the bulk

The temperature-dependent surface phase behavior of two sparingly soluble surfactants, namely, ethylene glycol n-dodecyl ether (EGDE) and ethylene glycol n-tetradecyl ether (EGTE), at the air-water interface was investigated by film balance and Brewster angle microscopy (BAM). A cusp point followed by a pronounced plateau region in the surface pressure-time (pi-t) adsorption isotherms of the amphiphiles measured by film balance indicates the first-order phase transition. Bright two-dimensional condensed phase domains in a dark background are observed by BAM just after the phase transition. In both cases the critical surface pressure necessary for the phase transition increases with increasing temperature. The domains are found to be circular up to 5 and 27 degrees C for EGDE and EGTE, respectively, above which they show a fingering pattern. Condensed domains are observed up to 23 and 37 degrees C for EGDE and EGTE, respectively. The surface properties of the amphiphiles are found to be markedly affected by their tendency to aggregate in the bulk as micelles. The CMC values of both the amphiphiles show a maximum at a definite temperature, T(max), that corresponds well to their respective maximum temperatures of domain formation. An increase in temperature beyond T(max) results in an increasing trend for the formation of micelles. Consequently the system suffers from a shortage of two-dimensional surface concentration of the molecules to attain the surface pressure necessary for phase transition. With increasing temperature, the enthalpy, DeltaH(m) degrees , and entropy, DeltaS(m) degrees , of micellization change from negative to positive in both cases. An enthalpy-entropy compensation effect is found to hold for both the amphiphiles over the entire temperature range. The thermodynamic quantities reveal that the increase in temperature is favorable for micellization when the temperature exceeds the corresponding T(max) of the amphiphiles.     

Synthesis of methylpyridine derivatives. XXXV. Reaction of acetylpyridine with phosphoryl chloride to give alkynylpyridine

Reaction of 3-acetyl-4,6-dimethyl-2-(1H)pyridone ( 9a ) with phosphoryl chloride gives 2-chloro-3-ethynyl-4,6-dimethylpyridine ( 10a ). 3-Acetyl-4-hydroxy-6-methyl-2(1H)pyridone (14a) and 3-acetyl-2,6-dimethyl-4-(1H)-pyridone (21) undergoes similar reaction to give the corresponding ethynyl (16 and 23) and chlorovinyl (15 and 22) pyridines, respectively. The chlorination of 3-acetylpyridine and pyrimidine derivatives is further described.     

Highly chemo- and regioselective phosphitylation of unprotected 2′-deoxyribonucleosides

We have developed the chemo- and regioselective phosphitylation of unprotected 2′-deoxyribonucleosides by the use of di-tert-butyl N,N-diethylphosphoramidite, a sterically hindered phosphoramidite. Both N/O- and primary hydroxy group-selectivities were simultaneously achieved, and the selectivity for the 5′-hydroxy groups was up to 97% regardless of the base moiety of the 2′-deoxyribonucleosides. The 3′-O-isomers and the 5′-O-isomers were easily separated by silica gel column chromatography or crystallization to give the pure 2′-deoxyribonucleoside 5′-phosphites in moderate to good yields.     

One-dimensional ion transport in self-organized columnar ionic liquids

New fan-shaped ionic liquids forming columnar liquid crystalline phases have been prepared to obtain one-dimensional ion-transporting materials. The ionic liquids consist of two incompatible parts: an imidazolium-based ionic part as an ion-conducting part and tris(alkyloxy)phenyl parts as insulating parts. Two compounds having octyl and dodecyl chains have been synthesized. Self-assembly of these materials leads to the formation of thermotropic hexagonal columnar liquid crystalline states at room temperature. Anisotropic one-dimensional ionic conductivities have been successfully measured by the cells having comb-shaped gold electrodes. The self-organized columns have been aligned macroscopically in two directions by shearing perpendicular and parallel to the electrodes. The ionic conductivities parallel to the column axis are higher than those perpendicular to the axis. The incorporation of lithium salts in these columnar materials leads to the enhancement of the ionic conductivities and their anisotropy. These materials would be useful for anisotropic transportation of ions at the nanometer level.     

Quantitative study of diffuse increased 99mTc-methylene diphosphonate accumulation of both kidneys

Patients with diffuse increased accumulation in both kidneys on 99mTc-MDP bone scintigram were evaluated quantitatively. Among 1,100 cases, 7 (0.63%) showed this finding. The accumulation density ratios of kidneys/lumbal vertebra in A/D exchanged images of these patients were compared with control group, so that these ratios of patient group were higher than control group statistically. In conclusion, the accumulation density ratio was made the index of diffuse increase accumulation in both kidneys on 99mTc-MDP bone scintigram.     

WAVELENGTH-DEPENDENT PROPERTIES OF PHOTOTAXIS IN LARVAE OF Bombyx mori

Phototactic responses of newly hatched silkworm larvae to monochromatic lights and their mixtures were measured to determine wavelength-dependent properties. Each fluence rate-response curve for a monochromatic light was composed of a log-linearly increasing part, a plateau and a decreasing part. Curves were classified into two groups according to the slopes of the linear parts: responses to UV-blue light (364-482 nm) and responses to green-red light (513-681 nm). Different plateau values were found for both groups. The action spectrum had its maximum at 557 nm and showed another large value at about 364 nm, and its minimum was at 447 nm. When green-orange lights (540-577 nm) were added to 557 nm, the silkworms were attracted more by the mixed lights than by the 557 nm component light only. Mixed lights of UV (364 nm) and blue (447 nm) attracted the silkworms more than either component. The magnitude of the response decreased remarkably when green light was mixed with U V or blue light. We conclude that the silkworm possesses colour vision and responds differently to green-red lights (≥ 513 nm) from UV-blue lights (≲ 482 nm).