Activation energy associated with the electromigration of oligosaccharides through viscosity modifier and polymeric additive containing background electrolytes

The activation energy related to the electromigration of oligosaccharides can be determined from their measured electrophoretic mobilities at different temperatures. The effects of a viscosity modifier (ethylene glycol) and a polymeric additive (linear polyacrylamide) on the electrophoretic mobility of linear sugar oligomers with α1–4 linked glucose units (maltooligosaccharides) were studied in CE using the activation energy concept. The electrophoretic separations of 8‐aminopyrene‐1,3,6‐trisulfonate‐labeled maltooligosaccharides were monitored by LIF detection in the temperature range of 20–50°C, using either 0–60% ethylene glycol (viscosity modifier) or 0–3% linear polyacrylamide (polymeric additive) containing BGEs. Activation energy curves were constructed based on the slopes of the Arrhenius plots. With the use of linear polyacrylamide additive, solute size‐dependent activation energy variations were found for the maltooligosaccharides with polymerization degrees below and above maltoheptaose (DP 7), probably due to molecular conformation changes and possible matrix interaction effects.     

Numerical optimization of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry: application to synthetic polymer molecular mass distribution measurement

A novel approach is described for the selection of optimal instrument parameters that yield a mass spectrum which best replicates the molecular mass distribution of a synthetic polymer. The application of implicit filtering algorithms is shown to be a viable method to find the best instrument settings while simultaneously minimizing the total number of experiments that need to be performed. This includes considerations of when to halt the iterative optimization process at a point when statistically-significant gains can no longer be expected. An algorithm to determine the confidence intervals for each parameter is also given. Details on sample preparation and data analysis that ensure stability of the measurement over the time scale of the optimization experiments are provided. This work represents part of an effort to develop an absolute molecular mass distribution polymer Standard Reference Material.     

Theoretical analysis of intermolecular covalent pi-pi bonding and magnetic properties of phenalenyl and spiro-biphenalenyl radical pi-dimers

Singlet-triplet splittings DeltaEST and intermolecular covalent pi-pi bonding characteristics of the prototypical phenalenyl pi-dimer and eight spiro-biphenalenyl radical pi-dimer structures are analyzed with the aid of restricted and unrestricted density functional theory calculations and paramagnetic susceptibility data fitted using the Bleaney-Bowers dimer model and the Curie-Weiss model. Single determinant approximations for DeltaEST as a function of transfer integrals and on-site Coulomb repulsion energy are presented for the two-electron two-site pi-dimers of phenalenyls and the two-electron four-site pi-dimers of spiro-biphenalenyl radicals. Within the range of intermolecular separation of 3.12相似文献   

Local modifications of single-wall carbon nanotubes induced by bond formation with encapsulated fullerenes

Defected fullerenes in nanopeapods form bonds with the encapsulating single-walled carbon nanotubes when irradiated by an electron beam leading to changes in the guest (fullerene) and the host (nanotube). Intrinsic reaction coordinate (IRC) analysis based on B3LYP hybrid density functional theory shows that a C1-C59 defect with a single protruding C atom is initially formed from the C60(Ih) cage. The high activation energy for this step (8.37 eV (193.0 kcal/mol)), being assumed to be accessible during irradiation, is lower than that of the Stone-Wales rearrangement on the sp2 network. The binding of the defected fullerene to the nanotube is preferential, orthogonal bonds relative to the tube axis being slightly preferred. Because of the covalent bonds formed between the guest and host, the carbon network on the nanotube is locally perturbed in the vicinity of the binding site. As a result of the new bonds, bisnorcaradiene-like as well as quinonoid-like patterns appear near the binding site. These results are interpreted using orbital interaction and Clar diagram arguments. The changes in the bonding pattern on the nanotube should be significant in further functionalization of carbon nanotubes.     

Boronic acid–lectin affinity chromatography. 1. Simultaneous glycoprotein binding with selective or combined elution

We introduce a novel combination of boronic acid affinity chromatography with lectin affinity chromatography, dubbed as boronic acid–lectin affinity chromatography (BLAC). Concanavalin A and wheat germ agglutinin lectins were mixed with the pesudo-lectin boronic acid to form the BLAC affinity column and their performance was evaluated with standard glycoproteins. Optimization of the binding and elution buffers for the BLAC system is described. The BLAC columns were employed to isolate glycoproteins of interest using both selective and/or combined elution.     

Non-conformal holography of heavy quark quenching

We develop a holographic (bottom-up) gravity model for QCD to understand the connection between the peak in the trace anomaly and the magnitude of heavy quark energy loss in a strongly-coupled plasma. The potential of the scalar field on the gravity side is constructed to reproduce some properties of QCD at finite temperature and its parameters are constrained by fitting lattice gauge theory results. The energy loss of heavy quarks (as predicted by the holographic model) is found to be strongly sensitive to the medium properties.     

Conformations of antipyrines

Reliable conformational energetics is essential in interpreting and predicting structures of molecular crystals. We provide a combined density functional theory (DFT)-structural database study, demonstrating that this combination can be used as a foundation for this purpose. A subtle problem of nitrogen pyramidalization is used as the example in antipyrines, a group of bioactive molecules. Nitrogen pyramidalization on the two adjacent sp(3) nitrogens directly affects the orientation of the methyl and phenyl substituents, which tend toward opposite sides of the heteroaromatic ring, affecting crystal packing. Accordingly, the overwhelming majority of the structures of antipyrines in the Cambridge Structural Database (CSD) are either nearly planar or have substituents on the opposite sides of the ring. Recent powder X-ray structures by Lemmerer et al. identified propyphenazone, an antipyrine, to have two substituents on the same side in an apparently sterically crowded conformation. We show that the new structure, although counterintuitive, is not an outlier on the conformational map. A distribution of the conformations of all antipyrines listed in the CSD is in good agreement with the computed conformational map. We also examine the role of the hysteretic property of the phenyl torsion in propyphenazone and its indirect effects on its overall conformation.     

Bonds or not bonds? Pancake bonding in 1,2,3,5-dithiadiazolyl and 1,2,3,5-diselenadiazolyl radical dimers and their derivatives

Unusually long bonds or short intermolecular contacts occur in the title compounds reminiscent of pancake bonding. Pancake bonding interactions seem analogous to π-stacking interactions, but they display much shorter contact distances than normally seen in van der Waals (vdW) dimers. The interpretation of these SN and SeN containing structures has been an outstanding challenge for some time. The antibonding (π*) singly occupied molecular orbital (SOMO) of the radical is the source of two-electron multicenter bonding (2e/mc). Preferred conformations thus can be traced back to SOMO-SOMO overlap. We used several computational methods to understand the nature of pancake bonding in the title compounds including four wave function methods (WFT) and a dozen density functional theories (DFT) including empirical dispersion corrections. We used experimental data and high level CCSD(T)/6-311++G(d,p) and MRPT2/6-311++G(d,p) calculations for comparison. The analysis provided the interpretation a wealth of experimental data including conformational preferences of these SN and SeN containing radical dimers leading to a better overall understanding of pancake bonding. Analysis of the various components of the inter-radical interactions showed that SOMO-SOMO bonding interaction and dispersion interaction contribute to the binding energy and neither of these interactions alone is sufficient to bind the dimer. The dimer is predicted to show weak diradical character.     

High-throughput analysis of therapeutic and diagnostic monoclonal antibodies by multicapillary SDS gel electrophoresis in conjunction with covalent fluorescent labeling

Capillary gel electrophoresis (CGE) in the presence of sodium dodecyl sulfate (SDS) is a well-established and widely used protein analysis technique in the biotechnology industry, and increasingly becoming the method of choice that meets the requirements of the standards of International Conference of Harmonization (ICH). Automated single channel capillary electrophoresis systems are usually equipped with UV absorbance and/or laser-induced fluorescent (LIF) detection options offering general applicability and high detection sensitivity, respectively; however, with limited throughput. This shortcoming is addressed by the use of multicapillary gel electrophoresis (mCGE) systems with LED-induced fluorescent detection (LED-IF), also featuring automation and excellent detection sensitivity, thus widely applicable to rapid and large-scale analysis of biotherapeutics, especially monoclonal antibodies (mAb). The methodology we report in this paper is readily applicable for rapid purity assessment and subunit characterization of IgG molecules including detection of non-glycosylated heavy chains (NGHC) and separation of possible subunit variations such as truncated light chains (Pre-LC) or alternative splice variants. Covalent fluorophore derivatization and the mCGE analysis of the labeled IgG samples with multi-capillary gel electrophoresis are thoroughly described. Reducing and non-reducing conditions were both applied with and without peptide N-glycosidase F mediated deglycosylation.     

ipso-Bromination/iodination of arylboronic acids: Poly(4-vinylpyridine)-Br2/I2 complexes as safe and efficient reagents

Poly(4-vinyl pyridine) supported bromine/iodine complexes were prepared and probed for ipso-bromination/iodination of arylboronic acids. These solid complexes with catalytic amount of additive are found to be safe and efficient reagent system for the ipso-bromination/iodination. The reaction occurs under mild conditions and tolerates various functional groups resulting in products with high selectivity and yields.