SPIN-TRAPPING and ESR STUDIES OF THE DIRECT PHOTOLYSIS OF AROMATIC AMINO ACIDS, DIPEPTIDES, TRIPEPTIDES and POLYPEPTIDES IN AQUEOUS SOLUTIONS—III. TRYPTOPHAN and RELATED COMPOUNDS

Abstract— The UV photolysis of tryptophan (Trp) and Trp-containing peptides in aerated aqueous solutions has been studied by ESR and spin-trapping techniques using f-nitrosobutane as the spin-trap. The photolysis of Trp alone at 290 nm gave rise to the addition of the spin-trap to carbon 3 of the indole ring. A large ESR signal from the hydronitroxide spin-adduct was also observed revealing the formation of hydrated electrons. Generally, the photolysis of Trp-containing dipeptides generated the deamination radical of the N-terminal amino acid followed by addition to the spin-trap. In the case of lysyl-Trp, a deamination radical from the side chain of lysine was proposed. A sensitization experiment with Trp as sensitizer and glycine (Gly) as substrate led to the generation of the deamination radical of Gly. Most of the observed free radicals resulting from the photolysis of Trp-containing peptides can be explained in terms of hydrated electrons reacting with the carbonyl group followed by deamination of the N-terminus.     

Quantum chemical and master equation studies of the methyl vinyl carbonyl oxides formed in isoprene ozonolysis

Methyl vinyl carbonyl oxide is an important intermediate in the reaction of isoprene and ozone and may be responsible for most of the (*)OH formed in isoprene ozonolysis. We use CBS-QB3 calculations and RRKM/master equation simulations to characterize all the pathways leading to the formation of this species, all the interconversions among its four possible conformers, and all of its irreversible isomerizations. Our calculations, like previous studies, predict (*)OH yields consistent with experiment if thermalized syn-methyl carbonyl oxides form (*)OH quantitatively. Natural bond order analysis reveals that the vinyl group weakens the C=O bond of the carbonyl oxide, making rotation about this bond accessible to this chemically activated intermediate. The vinyl group also allows one conformer of the carbonyl oxide to undergo electrocyclization to form a dioxole, a species not previously considered in the literature. Dioxole formation, which has a CBS-QB3 reaction barrier of 13.9 kcal/mol, is predicted to be favored over vinyl hydroperoxide formation, dioxirane formation, and collisional stabilization. Our calculations also predict that two dioxole derivatives, 1,2-epoxy-3-butanone and 3-oxobutanal, should be major products of isoprene ozonolysis.     

Study of chemiluminescence in O + NO elementary reaction by a crossed beam technique

Chemiluminescent spectra of nitrogen dioxide in the visible region have been observed in the O + NO elementary reaction by a crossed beam technique. Dependences of the emission intensity on both the nitric oxide and atomic oxygen fluxintensities were first order, and the emission was concentrated near the crossin point. These results show that the chemiluminescence observed is due to the chemically excited NO₂ formed in the binary reaction between NO and O.     

A Strategy toward Cyclic Topologies Based on the Dynamic Behavior of a Bis(hindered amino)disulfide Linker

A simple and efficient method to generate macrocyclic structures has been developed based on the dynamic behavior of the linker bis(2,2,6,6‐tetramethylpiperidin‐1‐yl)disulfide (BiTEMPS). The prime linear structure was transformed into a (macro)cycle using the following sequence: 1) thiol–ene reaction with a BiTEMPS derivative to afford the linear precursor, then 2) an entropy‐driven transformation induced by diluting and heating. The radicals generated from BiTEMPS upon heating are highly tolerant toward a variety of chemical species, including oxygen and olefins, but they exhibit high reactivity in exchange reactions, which can be applied to the topology transformation of various skeletons. The advantages of the present method, namely, its procedural simplicity and substrate versatility, are demonstrated by the gram‐scale synthesis of cyclic compounds with low and relatively high molecular weight.     

Sum rules for complex reflection amplitudes of photons

Using the Kramers-Kronig dispersion relations, sum rules have been derived for the complex reflection amplitudes of photons. They provide direct consistency criteria in the analysis of reflectivity measurements.     

Coordination chemistry of a new rigid, hexadentate bispidine-based bis(amine)tetrakis(pyridine) ligand

The hexadentate bispidine-based ligand 2,4-bis(2-pyridyl)-3,7-bis(2-methylenepyridine)-3,7-diazabicyclo[3.3.1]nonane-9-on-1,5-bis(carbonic acid methyl ester), L(6m), with four pyridine and two tertiary amine donors, based on a very rigid diazaadamantane-derived backbone, is coordinated to a range of metal ions. On the basis of experimental and computed structural data, the ligand is predicted to form very stable complexes. Force field calculations indicate that short metal-donor distances lead to a buildup of strain in the ligand; that is, the coordination of large metal ions is preferred. This is confirmed by experimentally determined stability constants, which indicate that, in general, stabilities comparable to those with macrocyclic ligands are obtained with the relative order Cu(2+) > Zn(2+) > Ni(2+) < Co(2+), which is not the typical Irving-Williams behavior. The preference for large M-N distances also emerges from relatively high redox potentials (the higher oxidation states, that is, the smaller metal ions, are destabilized) and from relatively weak ligand fields (dd-transition, high-spin electronic ground states). The potentiometric titrations confirm the efficient encapsulation of the metal ions since only 1:1 complexes are observed, and, over a large pH range, ML is generally the only species present in solution.     

Intense laser-induced decomposition of mass-selected 2-, 3-, and 4-methylaniline cations

Photodecomposition processes of 2-, 3-, and 4-methylaniline cations induced by a moderately intense (10¹¹ W/cm²) visible nanosecond laser field and an intense (10¹⁵ W/cm²) UV femtosecond laser field have been investigated using a tandem mass spectrometer. Highly unsaturated fragment cations such as and are dominantly produced by the nanosecond laser, while less unsaturated smaller fragment cations such as , and are produced mainly by the femtosecond laser. Ab initio calculations have also been performed to estimate the stable geometrical structures of and and those of possible intermediate ring compounds for discussing the photodecomposition pathways in intense laser fields.     

Computational studies of intramolecular hydrogen atom transfers in the beta-hydroxyethylperoxy and beta-hydroxyethoxy radicals

The beta-hydroxyethylperoxy (I) and beta-hydroxyethoxy (III) radicals are prototypes of species that can undergo hydrogen atom transfer across their intramolecular hydrogen bonds. These reactions may play an important role in both the atmosphere and in combustion systems. We have used density functional theory and composite electronic structure methods to predict the energetics of these reactions, RRKM/master equation simulations to model the kinetics of chemically activated I, and variational transition state theory (TST) to predict thermal rate constants for the 1,5-hydrogen shift in I (Reaction 1) and the 1,4-hydrogen shift in III (Reaction 2). Our multi-coefficient Gaussian-3 calculations predict that Reaction 1 has a barrier of 23.59 kcal/mol, and that Reaction 2 has a barrier of 22.71 kcal/mol. These predictions agree rather well with the MPW1K and BB1K density functional theory predictions but disagree with predictions based on B3LYP energies or geometries. Our RRKM/master equation simulations suggest that almost 50% of I undergoes a prompt hydrogen shift reaction at pressures up to 10 Torr, but the extent to which I is chemically activated is uncertain. For Reaction 1 at 298 K, the variational TST rate constant is approximately 30% lower than the conventional TST result, and the microcanonical optimized multidimensional tunneling (muOMT) method predicts that tunneling accelerates the reaction by a factor of 3. TST calculations on Reaction 2 reveal no variational effect and a 298 K muOMT transmission coefficient of 10(5). The Eckart method overestimates transmission coefficients for both reactions.