Stereochemical Assignment of the Protein–Protein Interaction Inhibitor JBIR‐22 by Total Synthesis

Recent reports have highlighted the biological activity associated with a subfamily of the tetramic acid class of natural products. Despite the fact that members of this subfamily act as protein–protein interaction inhibitors that are of relevance to proteasome assembly, no synthetic work has been reported. This may be due to the fact that this subfamily contains an unnatural 4,4‐disubstitued glutamic acid, the synthesis of which provides a key challenge. A highly stereoselective route to a masked form of this unnatural amino acid now enabled the synthesis of two of the possible diastereomers of JBIR‐22 and allowed the assignment of its relative and absolute stereochemistry.     

A new lignan glycoside and phenylethanoid glycosides from Strobilanthes cusia BREMEK

The root of Strobilanthes cusia BREMEK. (Acanthaceae), popularly known as Da-Ching-Yeh, has been commonly used in traditional Chinese medicine. It is used to treat influenza, epidemic cerebrospinal meningitis, encephalitis B, viral pneumonia, mumps, and severe acute respiratory syndrome (SARS). In this study, we found a new lignan glycoside (6) and two new phenylethanoid glycosides (7, 8) together with five known compounds as chemical constituents of Strobilanthes cusia root. Some samples were examined for anti-herpes simplex virus type-1 (HSV-1) activity. Among the tested samples, lupeol showed anti-HSV-1 activity (EC(50): 11.7 microM) and showed 100% inhibition of virus plaque formation at 58.7 microM.     

Extractability of dioxins from soil: II. Effects of acid or alkaline pretreatment on the extractability of dioxin homologues from soil samples

The effects of sample pretreatment on the extractability of polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), and coplanar polychlorinated biphenyls (CoPCBs) from three suburban soil samples were evaluated. The samples were treated with 0.1?M HCl or 0.1?M NaOH and extracted by pressurized liquid extraction (PLE) with toluene. In addition, untreated soil samples were subjected to PLE with acetone. The extractability values were compared to values obtained by toluene extraction without pretreatment. Alkaline pretreatment increased the extractability of higher-chlorinated CDDs (HiCDDs), whereas acid pretreatment slightly decreased their extractability. No change in extractability was observed for higher-chlorinated CDFs under any conditions. The extractability of lower-chlorinated CDD/Fs (LoCDD/Fs) and CoPCBs was increased only by acetone extraction. PCDD/F homologue profiles in soil humic acid fractions and those in dead leaves, a major raw material of soil humus, were also determined. These results suggest that the variations in the extractability of dioxin homologues are due mainly to variations in their physical state in the soil, especially their interactions with soil humus.     

Characterization of aluminum species with nitrate, perchlorate and sulfate ions in the positive and negative ion mode by electrospray ionization mass spectrometry

The application of electrospray ionization mass spectrometry (ESI-MS) for aluminum speciation in the positive and negative ion modes was discussed. Aluminum nitrate, perchlorate and sulfate solutions were measured by ESI-MS. In the positive ion mode, aluminum species containing anions (Al-L; L=NO3, ClO4 and SO4) were identified, while [Al(OH)2(H2O)n]+ (n=2-4) were the main species. The affinity of the anions with Al3+ estimated by ESI-MS was consistent with the hardness of the anions (hard and soft acids and bases principle) and the results from 27Al nuclear magnetic resonance studies. This indicates that the results observed from the positive ion mode preserved the chemical state of aluminum in the solution. In the negative ion mode, [Al(OH)4-nLn]- (n=0-2, L=NO3, ClO4) were the main species, which were considered to be converted from positive aluminum species, [Al(OH)(H2O)n]+ (n=2-4), by the successive addition of anions. Anions did not only attach to one aluminum ion but also bridged two aluminum ions. In Al2(SO4)3 solution, the behavior of SO4(2-) in the negative ion mode differed from that of NO3- and ClO4-. This may reflect the affinity of SO4(2-) with Al3+ in the solution or in the mass spectrometer or in both. Finally, detection mechanisms for the aluminum species in the solution are proposed for both the positive and negative ion modes. It is shown that ESI-MS can be used to observe the interaction between Al3+ and anions. We show the importance of the interpretation of the results by ESI-MS for obtaining new information of the metal species in the solution.     

Quantitative analysis of near surfaces three‐dimensional orientation of polymer chains in PET and PEN films using polarized ATR FTIR spectroscopy

Polarized attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy was utilized to characterize the three‐dimensional orientation of polymer chains near highly anisotropic surfaces generated by uniaxial drawing. A versatile method was proposed to analyze the molecular orientation of the polymers by combining the experimental refractive indices and optimized contact pressure by an anvil for solving the optical contact problem. This method is effective even when changes in the molecular orientation along the thickness direction caused by drawing are remarkable. In addition, this method enables quantitative comparison of the molecular orientation among different polymers in the same coordinate system. From the molecular orientation analysis of poly (ethylene terephthalate) (PET) and poly (ethylene naphthalate) (PEN), it was revealed that this method has a broader range of applications with high accuracy in estimating the molecular orientation of polymers compared with the conventional methods. The significant changes in the molecular orientation caused by uniaxial and biaxial drawing of PET and PEN films were quantitatively analyzed, and the reasons for the significant in‐plane orientation of PEN chains on the film plane are discussed. In addition, the difference in the molecular orientation between both sides of the films was also demonstrated. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 870–879, 2010     

Non‐target environmental analysis by liquid chromatography/high‐resolution mass spectrometry with a product ion and neutral loss database

Despite the increasing detection of emerging substances in the environment, the identity of most are left unknown due to the lack of efficient identification methods. We developed a non‐target analysis method for identifying unknown substances in the environment by liquid chromatography/high‐resolution mass spectrometry (LC/HRMS) with a product ion and neutral loss database (PNDB). The present analysis describes an elucidation method with elemental compositions of the molecules, product ions, and corresponding neutral losses of the unknown substance: (1) with the molecular formula, possible molecular structures are retrieved from two chemical structure databases (PubChem and ChemSpider); then (2) with the elemental compositions of product ions and neutral losses, possible partial structures are retrieved from the PNDB; and finally, (3) molecular structures that match the possible partial structures are listed in order of number of hits. A molecular structure with a higher number of hits is more similar to the structure of the analyzed substance. The performance of the non‐target method was evaluated by simulated analysis of 150 LC/HRMS spectra registered in MassBank. First, all substances of the same mass data (41/41) and 68% (39/57) of the mass data of the same substances not registered in the PNDB were elucidated. It was demonstrated that 14% (7/52) and 31% (16/52) of the substances with no mass spectral data registered in the PNDB were obtained at the first and within the fifth place, respectively. Owing to the fact that 10 of the total hits occurred in product ions and neutral losses, almost 50% of the substances evaluated with this method were placed at the top 4 positions in the similarity ranking. Importantly, the proposed method is effective for analyzing mass spectral data that has not been registered in the PNDB and thus is expected to be used for a variety of non‐target analyses.     

Application of Phosphonium Salts to the Reactions of Various Kinds of Amides

The phosphonium salts 1 and 2 prepared from triphenylphosphine and N‐halogenosuccinimide proved to be applicable to the conversion of amide compounds. Especially, halogenation of electron‐deficient heteroaromatic alcohols with these reagents seems to be a convenient method compared to the halogenation with phosphorus oxyhalides.     

Explanation of Human Skin Color by Multiple Linear Regression Analysis Based on the Modified Lambert-Beer Law

Quantitative analysis of human skin color is needed in the medical and cosmetic fields. Because of the strong light scattering by biological tissues, however, analysis of skin color has not yet been fully successful. Human skin color is dominated by the colors of blood and melanin which are modified by scattering. Exposure of human skin to hot water or UV-ray changes its color because the absorbance spectrum of reflection from the human skin, and the changes in the absorbance spectra of reflection reflect the absorbance spectra of blood and melanin which are the absorption spectrum distorted by scattering. By applying the modified Lambert-Beer law, the absorbance spectrum of reflection from human skin can be expressed proportional to those distorted absorbance spectra of blood and melanin. Multiple linear regression analysis is successfully used to reproduce the absorbance spectrum of reflection from human skin from the distorted absorbance spectra of blood and melanin.     

Synthesis of the ABC and IJ ring fragments of yessotoxin

Synthesis of a 6/6/6 tricyclic ether system (3) corresponding to the ABC ring fragment of yessotoxin (1) has been achieved via coupling of a triflate and a 2-lithiofuran followed by intramolecular hetero-Michael addition. The IJ ring fragment (4) of 1 was readily synthesized via successive Sharpless epoxidation and 6-endo cyclization of the resulting vinyl epoxide.     

Single-cell Trapping Using Microwell Arrays Fabricated from Self-assembled Particle Monolayers

This paper proposes a self-assembly fabrication method of microwells and investigates the effect of surface treatment for the cell trapping. The target cell is unicellular cyanobacterium Synechocystis sp. strain PCC 6803, which has been widely investigated as a model organism for photosynthesis. The self-assembly monolayer of polystyrene particles (3.0 μm diameter) etched by reactive-ion etching was used as a template of polydimethylsiloxane molds. The well diameter in the mold could be controlled by the etching time. The cell-trapping efficiency was discussed with the viewpoint of hydrophilically treatment and poly-L-lysine treatment on the well arrays.