Hierarchical self-assembly in diblock copolypeptides of poly(γ-benzyl-l-glutamate) with poly poly(l-leucine) and poly(O-benzyl-l-tyrosine)

Block copolypeptides with their inherent nanometer length scale of phase separation, provide means of manipulating the type (α-helices, β-strands) and persistence of peptide secondary structures. Two such examples are employed based on the α-helical poly(γ-benzyl-l-glutamate) (PBLG) polypeptide as one block and poly(l-leucine) (α-helical) or poly(O-benzyl-l-tyrosine) (POBT) (β-strands) as the second block. Although both secondary structures are present in the copolypeptides the effect of nano-scale confinement is to induce folding in the POBT β-sheets and to maintain the defected α-helices of PBLG and PLEU with a limited lateral coherence.     

The two-body problem with generalized Lennard-Jones potential

We consider a generalization of the famous Lennard-Jones potential. To study the two-body problem associated to this potential, we use the foliations of the phase space by the invariant sets corresponding to the first integrals of energy and angular momentum. We investigate all possible situations created by the interplay among the constants of integration and the field parameters. We obtain the global flow, and illustrate it in both 3D and 2D. This flow exhibits a great variety of orbits, a homoclinic one included. All phase portraits are interpreted in terms of physical trajectories.     

Hemin interaction with bare and 4,4'-thio-bis-benzene-thiolate covered n-GaAs (110) electrodes

Cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS) investigations on the redox behavior of hemin at bare and 4,4'-thio-bis-benzene-thiolate (TBBT) covered n-GaAs (110) electrodes in dimethylsulfoxide (DMSO) revealed the high irreversibility of the electroreduction process, which appeared to be closely related to the stable adsorbed species strongly interfering with the electronic properties of the semiconducting substrate. The subsequent exploration of the hemin-modified electrodes by second harmonic generation (SHG), X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM) measurements pointed to significant differences between the iron protoporphyrin species adsorbed on the bare- and TBBT-GaAs (110) electrodes. Only Fe(2+) species having a flat configuration with the porphyrin plane oriented parallel to the surface were detected on GaAs, unlike the TBBT-GaAs, where Fe(2+) and Fe(3+) species having both flat and vertical adsorption positions could be observed. These differences originate from the mutual interactions between the solvent, hemin and dithiolate molecules as well as their competition for the surface sites found to play a key role in the electrochemical process under discussion.     

Cyanide-Bridged Fe(III)-Cu(II) Complexes: Jahn-Teller Isomerism and Its Influence on the Magnetic Properties

We report here the synthesis and characterization of four dinuclear cyanide-bridged Fe(III)-Cu(II) complexes, based on a tetra- or a pentadentate bispidine ligand (L(1) or L(2), respectively; bispidines are 3,7-diazabiyclo[3.3.1]nonane derivatives) coordinated to the Cu(II) center, and a tridentate bipyridineamide (bpca) coordinated to the low-spin Fe(III) site, with cyanide groups completing the two coordination spheres, one of them bridging between the two metal ions. The four structurally characterized complexes [{Fe(bpca)(CN)(3)}{Cu(L(1)·H(2)O)}]BF(4), [{Fe(bpca)(CN)(3)}{Cu(L(2))}][Fe(bpca)(CN)(3)]·5H(2)O, [{Fe(bpca)(CN)(3)}{Cu(L(2)·MeOH)}]PF(6)·MeOH·H(2)O, and [{Fe(bpca)(CN)(3)}{Cu(L(2))}]PF(6)·2H(2)O belong to different structural isomers. The most important differences are structurally and electronically enforced (direction of the pseudo-Jahn-Teller mode) strong or weak interactions of the copper(II) center with the cyanide bridge. The related strength of the magnetic coupling of the two centers is analyzed with a combination of experimental magnetic, electron paramagnetic resonance (EPR), electronic spectroscopic data together with a ligand-field theory- and density functional theory (DFT)-based analysis.     

ToF‐SIMS characterisation of methane‐ and hydrogen‐plasma‐modified graphite using principal component analysis

Time of flight secondary ion mass spectrometry (ToF‐SIMS) has been used to determine the extent of surface modification of highly ordered pyrolytic graphite (HOPG) samples that were exposed to radio‐frequency methane and hydrogen plasmas. The ToF‐SIMS measurements were examined with the multivariate method of principal component analysis (PCA), to maximise the amount of spectral information retained in the analysis. This revealed that the plasma (methane or hydrogen plasma) modified HOPG exhibited greater hydrogen content than the pristine HOPG. The hydrogen content trends observed from the ToF‐SIMS studies were also observed in elastic recoil detection analysis measurements. The application of the ToF‐SIMS PCA method also showed that small hydrocarbon fragments were sputtered from the hydrogen‐plasma‐treated sample, characteristic of the formation of a plasma‐damaged surface, whereas the methane‐plasma‐treated surface sputtered larger hydrocarbon fragments, which implies the growth of a polymer‐like coating. Scanning tunnelling microscopy measurements of the modified surfaces showed surface features that are attributable to either etching or film growth after exposure to the hydrogen or methane plasma. Copyright © 2009 John Wiley & Sons, Ltd.     

Entropy and Free Energy of a Mobile Loop Based on the Crystal Structures of the Free and Bound Proteins

A mobile loop changes its conformation from "open" (free enzyme) to "closed" upon ligand binding. The difference in the Helmholtz free energy, ΔF(loop) between these states sheds light on the mechanism of binding. With our "hypothetical scanning molecular dynamics" (HSMD-TI) method ΔF(loop) = F(free) - F(bound) where F(free) and F(bound) are calculated from two MD samples of the free and bound loop states; the contribution of water is obtained by a thermodynamic integration (TI) procedure. In previous work the free and bound loop structures were both attached to the same "template" which was "cut" from the crystal structure of the free protein. Our results for loop 287-290 of AcetylCholineEsterase agree with the experiment, ΔF(loop)~ -4 kcal/mol if the density of the TIP3P water molecules capping the loop is close to that of bulk water, i.e., N(water) = 140 - 180 waters in a sphere of a 18 ? radius. Here we calculate ΔF(loop) for the more realistic case, where two templates are "cut" from the crystal structures, 2dfp.pdb (bound) and 2ace.pdb (free), where N(water) = 40 - 160; this requires adding a computationally more demanding (second) TI procedure. While the results for N(water) ≤ 140 are computationally sound, ΔF(loop) is always positive (18 ± 2 kcal/mol for N(water) = 140). These (disagreeing) results are attributed to the large average B-factor, 41.6 of 2dfp (23.4 ?(2) for 2ace). While this conformational uncertainty is an inherent difficulty, the (unstable) results for N(water) = 160 suggest that it might be alleviated by applying different (initial) structural optimizations to each template.     

Toward sustainable energy: photocatalysis of Cr-doped TiO<Subscript>2</Subscript>: 2. effect of defect disorder

The present chain of five papers considers the concept of solar-to-chemical energy conversion using TiO₂-based semiconductors. The series reports the effect of chromium on the key performance-related properties of polycrystalline TiO₂ (rutile), including electronic structure, photocatalytic activity, intrinsic defect disorder, electrochemical coupling and surface versus bulk properties. In this work, we show that the effect of chromium on photocatalytic performance of TiO₂ depends on its elemental content and the related defect disorder that is determined by oxygen activity in the oxide lattice. At high oxygen activity, chromium leads to enhanced photocatalytic performance only for dilute solid solutions (up to 0.04–0.043 at.% Cr). Higher chromium content results in a decrease of photocatalytic activity below that for pure TiO₂, despite the observed substantial decrease of the band gap. The photocatalytic performance of Cr-doped TiO₂ annealed in reducing conditions is low within the entire studied range of compositions. The obtained results led to derivation of a theoretical model representing the mechanism of the light-induced reactivity of TiO₂ with water and the related charge transfer. The photocatalytic performance is considered in terms of a competitive effect of several key performance-related properties. The performance is predominantly influenced by the concentration of titanium vacancies acting as reactive surface sites related to anodic charge transfer.

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International perspective on nanotechnology papers,patents, and NSF awards (2000–2016)

This paper presents the development of nanotechnology between 2000 and 2016 as reflected in the Web of Science papers, United States Patent and Trademark Office (USPTO), World International Property Organization (WIPO) patents, and National Science Foundation (NSF) awards, with a special reference to the United States (US), European Union (EU27), P.R. China, Japan, and South Korea. The field of nanotechnology is branching out into novel scientific and technology platforms, and it is increasingly difficult to separate foundational nanoscale components from divergent application areas. The average global growth rate has been sustained at about 15% for both papers and patents in the selected interval. The growth rates among regions are non-uniform. P.R. China and South Korea have increased faster in both the numbers and quality of their scientific publications, and currently P.R. China has the largest volume of nanotechnology publications and South Korea the most publications per capita in the field of nanotechnology. The US, EU27, and Japan are maintaining leadership in the upstream, better cited, conceptual components of nanotechnology research and development.     

Quantum Transport in Presence of Bound States – Noise Power

The impact of bound states in Landauer‐Büttiker scattering approach to non‐equilibrium quantum transport is investigated. We show that the noise power at frequency ν is sensitive to all bound states with energies ω_b satisfying . We derive the exact expression of the bound state contribution and compare it to the one produced by the scattering states alone. The theoretical and experimental consequences of this result are discussed.