Transient tertiary structure formation within the ribosome exit port

The exit tunnel of the ribosome is commonly considered to be sufficiently narrow that co-translational folding can begin only when specific segments of nascent chains are fully extruded from the tunnel. Here we show, on the basis of molecular simulations and comparison with experiment, that the long-range contacts essential for initiating protein folding can form within a nascent chain when it reaches the last 20 ? of the exit tunnel. We further show that, in this "exit port", a significant proportion of native and non-native tertiary structure can form without steric overlap with the ribosome itself, and provide a library of structural elements that our simulations predict can form in the exit tunnel and is amenable to experimental testing. Our results show that these elements of folded tertiary structure form only transiently and are at their midpoints of stability at the boundary region between the inside and the outside of the tunnel. These findings provide a framework for interpreting a range of recent experimental studies of ribosome nascent chain complexes and for understanding key aspects of the nature of co-translational folding.     

Marine mammal blubber reference and control materials for use in the determination of halogenated organic compounds and fatty acids

The National Institute of Standards and Technology (NIST) has a diverse collection of control materials derived from marine mammal blubber, fat, and serum. Standard Reference Material (SRM) 1945 Organics in Whale Blubber was recertified for polychlorinated biphenyl (PCB) congeners, organochlorine pesticides, and polybrominated diphenyl ether (PBDE) congeners. SRM 1945 has also been assigned mass fraction values for compounds not frequently determined in marine samples including toxaphene congeners, coplanar PCBs, and methoxylated PBDE congeners which are natural products. NIST also has assigned mass fraction values, as a result of interlaboratory comparison exercises, for PCB congeners, organochlorine pesticides, PBDE congeners, and fatty acids in six homogenate materials produced from marine mammal blubber or serum. The materials are available from NIST upon request; however, the supply is very limited for some of the materials. The materials include those obtained from pilot whale blubber (Homogenates III and IV), Blainville’s beaked whale blubber (Homogenate VII), polar bear fat (Homogenate VI), and California sea lion serum (Marine Mammal Control Material-1 Serum) and blubber (Homogenate V).     

Preparation and characterization of standard reference material 1849 infant/adult nutritional formula

Standard Reference Material (SRM) 1849 Infant/Adult Nutritional Formula has been issued by the National Institute of Standards and Technology (NIST) as a replacement for SRM 1846 Infant Formula, issued in 1996. Extraction characteristics of SRM 1846 have changed over time, as have NIST's analytical capabilities. While certified mass fraction values were provided for five constituents in SRM 1846 (four vitamins plus iodine), certified mass fraction values for 43 constituents are provided in SRM 1849 (fatty acids, elements, and vitamins) and reference mass fraction values are provided for an additional 43 constituents including amino acids and nucleotides, making it the most extensively characterized food-matrix SRM available from NIST.     

Characterization of the volatile organic compounds of Italian 'Fossa' cheese by solid-phase microextraction gas chromatography/mass spectrometry

Fossa cheese is an Italian hard cheese, ripened for up to 3 months in underground pits dug into tuffaceous rock. During this period, the cheese develops a unique flavour and intense and somewhat piquant aroma. Solid-phase microextraction gas chromatography/mass spectrometry (SPME-GC/MS) was utilized to characterize the volatile organic compounds (VOCs) of Fossa cheese. A total of 75 VOCs were separated and identified; in particular, the major class of compounds found in the cheeses ripened in the pits were the esters of fatty acids. Discriminant analysis of volatile profiles allowed us to distinguish between cheeses in different stages of seasoning (60-day-old cheese and cheese ripened an additional 90 days in and out of the pits).     

Acoustic emission localization in complex dissipative anisotropic structures using a one-channel reciprocal time reversal method

This paper presents an imaging method for the localization of the impact point in complex anisotropic structures with diffuse field conditions, using only one passive transducer. The proposed technique is based on the reciprocal time reversal approach (inverse filtering) applied to a number of waveforms stored into a database containing the experimental Green's function of the structure. Unlike most acoustic emission monitoring systems, the present method exploits the benefits of multiple scattering, mode conversion, and boundaries reflections to achieve the focusing of the source with high resolution. Compared to a standard time reversal approach, the optimal refocusing of the back propagated wave field at the impact point is accomplished through a "virtual" imaging process. The robustness of the inverse filtering technique is experimentally demonstrated on a dissipative stiffened composite panel and the source position can be retrieved with a high level of accuracy in any position of the structure. Its very simple configuration and minimal processing requirements make this method a valid alternative to the conventional imaging Structural Health Monitoring systems for the acoustic emission source localization.     

Laboratory measurement of sound absorption of occupied pews and standing audiences

Places of worship, as well as other performing spaces or large arenas are characterized by lightweight pews or seats, with moderate or negligible upholstery, leading to very low absorption coefficients. Consequently, the audience becomes the most important sound absorbing element, capable of playing a fundamental role in determining the acoustic characteristics of the space. Consequently accurate knowledge of its acoustic properties is required for any design purpose. Several studies have been carried out with reference to audiences seated on upholstered theatre seats but there is a considerable lack of information about occupied pews. The well known difficulty of taking into account edge effects during such measurements poses further questions as well as the effect of the density of occupation, and the seasonal variations due to clothing. This paper presents the results of a series of laboratory measurements aimed at clarifying such aspects. The measurements showed that the edge effects are negligible and that total absorption is better related to the number of persons present than to the area they cover. Nonetheless, as the density grows, or when the audience is seated, there is a reduction in absorption which may be explained by the reduction in exposed body surface. Lightweight clothes show a considerable reduction in sound absorption over all the frequency bands, suggesting that significant seasonal fluctuations in reverberation time should be expected in places where the audience is the only sound absorbing surface.     

Abatement of thermal noise due to internal damping in 2D oscillators with rapidly rotating test masses

Mechanical oscillators can be sensitive to very small forces. Low frequency effects are up-converted to higher frequency by rotating the oscillator. We show that for 2-dimensional oscillators rotating at frequency much higher than the signal the thermal noise force due to internal losses and competing with it is abated as the square root of the rotation frequency. We also show that rotation at frequency much higher than the natural one is possible if the oscillator has 2 degrees of freedom, and describe how this property applies also to torsion balances. In addition, in the 2D oscillator the signal is up-converted above resonance without being attenuated as in the 1D case, thus relaxing requirements on the read out. This work indicates that proof masses weakly coupled in 2D and rapidly rotating can play a major role in very small force physics experiments.     

Extreme value statistics distributions in spin glasses

We study the probability distribution of the pseudocritical temperature in a mean-field and in a short-range spin-glass model: the Sherrington-Kirkpatrick and the Edwards-Anderson (EA) model. In both cases, we put in evidence the underlying connection between the fluctuations of the pseudocritical point and the extreme value statistics of random variables. For the Sherrington-Kirkpatrick model, both with Gaussian and binary couplings, the distribution of the pseudocritical temperature is found to be the Tracy-Widom distribution. For the EA model, the distribution is found to be the Gumbel distribution. Being the EA model representative of uniaxial magnetic materials with quenched disorder like Fe(0.5)Mn)0.5)TiO(3) or Eu(0.5)Ba(0.5)MnO(3), its pseudocritical point distribution should be a priori experimentally accessible.     

Non-linear QCD dynamics in two-photon interactions at high energies

Perturbative QCD predicts that the growth of the gluon density at high energies should saturate, forming a Color Glass Condensate (CGC), which is described in mean field approximation by the Balitsky–Kovchegov (BK) equation. In this paper we study the γγ interactions at high energies and estimate the main observables which will be probed at future linear colliders using the color dipole picture. We discuss in detail the dipole–dipole cross section and propose a new relation between this quantity and the dipole scattering amplitude. The total γγ, γ ^? γ ^? cross sections and the real photon structure function $F_{2}^{\gamma }(x,Q^{2})$ are calculated using the recent solution of the BK equation with running coupling constant and the predictions are compared with those obtained using phenomenological models for the dipole–dipole cross section and scattering amplitude. We demonstrate that these models are able to describe the LEP data at high energies, but predict a very different behavior for the observables at higher energies. Therefore we conclude that the study of γγ interactions can be useful to constrain the QCD dynamics.