Uncertainty evaluation for the quantification of low masses of benzo[a]pyrene: Comparison between the Law of Propagation of Uncertainty and the Monte Carlo method

A proper evaluation of the uncertainty associated to the quantification of micropollutants in the environment, like Polycyclic Aromatic Hydrocarbons (PAHs), is crucial for the reliability of the measurement results. The present work describes a comparison between the uncertainty evaluation carried out according to the GUM uncertainty framework and the Monte Carlo (MC) method. This comparison was carried out starting from real data sets obtained from the quantification of benzo[a]pyrene (BaP), spiked on filters commonly used for airborne particulate matter sampling. BaP was chosen as target analyte as it is listed in the current European legislation as marker of the carcinogenic risk for the whole class of PAHs.     

Deposition and characterization of a CoHCF nanorod array in a templated ormosil film on an electrode and application to electrocatalysis

Cobalt hexacyanoferrate (CoHCF) was electrodeposited into an organically modified silica (ormosil) film with a nanoarray of parallel, cylindrical channels, which were obtained using 20-nm poly(styrene sulfonate), PSS, beads as a templating agent. The PSS was bound to the electrode surface with 3-aminopropyltriethoxysilane, APTES. Methoxytrimethylsilane was the ormosil precursor. Electrochemically assisted processing at a positive potential where the hydrogen ion catalyst was generated was used to deposit the ormosil film. Subsequently, the PSS and APTES were removed to provide the pores. The CoHCF was deposited in the 20-nm channels by cyclic voltammetry of a freshly prepared K₃Fe(CN)₆, CoCl₂ mixture with 1.0 mol dm^?3 KCl as the supporting electrolyte. Limiting the number of electrodeposition cycles to 10–20 resulted in CoHCF nanorods in the pores, whereas with 50 cycles bulk-form CoHCF spilled over the outer ormosil surface. Electrocatalytic oxidation of cysteine was successfully performed on these nanorod arrays, which showed greater catalytic activity than bulk-form CoHCF.     

A toxicity evaluation and predictive system based on neural networks and wavelets

A computational approach has been developed for performing efficient and reasonably accurate toxicity evaluation and prediction. The approach is based on computational neural networks linked to modern computational chemistry and wavelet methods. In this paper, we present details of this approach and results demonstrating its accuracy and flexibility for predicting diverse biological endpoints including metabolic processes, mode of action, and hepato- and neurotoxicity. The approach also can be used for automatic processing of microarray data to predict modes of action.     

Reversible gas uptake by a nonporous crystalline solid involving multiple changes in covalent bonding

Hydrogen chloride gas (HCl) is absorbed (and reversibly released) by a nonporous crystalline solid, [CuCl2(3-Clpy)2] (3-Clpy = 3-chloropyridine), under ambient conditions leading to conversion from the blue coordination compound to the yellow salt (3-ClpyH)2[CuCl4]. These reactions require substantial motions within the crystalline solid including a change in the copper coordination environment from square planar to tetrahedral. This process also involves cleavage of the covalent bond of the gaseous molecules (H-Cl) and of coordination bonds of the molecular solid compound (Cu-N) and formation of N-H and Cu-Cl bonds. These reactions are not a single-crystal-to-single-crystal transformation; thus, the crystal structure determinations have been performed using X-ray powder diffraction. Importantly, we demonstrate that these reactions proceed in the absence of solvent or water vapor, ruling out the possibility of a water-assisted (microscopic recrystallization) mechanism, which is remarkable given all the structural changes needed for the process to take place. Gas-phase FTIR spectroscopy has permitted us to establish that this process is actually a solid-gas equilibrium, and time-resolved X-ray powder diffraction (both in situ and ex situ) has been used for the study of possible intermediates as well as the kinetics of the reaction.     

Homo- and hetero-dinuclear anion complexes

The tripodal system 4, in which urea fragments are appended to the three terminal amine nitrogen atoms of a tris(2-aminoethyl)amine (tren) subunit, includes a Cu(II) ion and two anions X-, according to a cascade mechanism through three well defined stepwise equilibria in a DMSO solution. The first anion X- (halide, N3-, NCS-, NO2-, H2PO4-) seeks the Cu(II) centre coordinated by the tren moiety; the second anion X- interacts with the trisurea cavity, but this occurs only if the stronger H-bond acceptors, such as N3- and H2PO4-, are used. Binding of the second X- ion is favoured by the preorganising effect exerted by the metal and disfavoured by the steric and electrostatic repulsions between the anions. Under the appropriate conditions, heterodinuclear complexes of formula [Cu(II)(4)(Cl)(H2PO4)] can be obtained in solution, in which Cl- is bound to the metal centre and H2PO4- interacts with the trisurea compartment.     

2-substituted benzofuran fragment ion formation in the electron ionization mass spectra of 6-alkyl- and 6-aryldibenzo(d,f)(1,3)dioxepine derivatives. 1. Spirocyclization of the molecular ions in the gas phase

The formation of 2-substituted benzo[b]furan ions in the electron ionization (EI) mass spectra of a series of 6-alkyl- and 6-aryldibenzo(d,f)(1,3)dioxepines has been studied by means of exact mass measurements and multiple-stage mass spectrometry conditions using an ion trap mass spectrometer. The proposed mechanism of formation of benzo[b]furan ions requires the formation of a spirocyclic cyclohexadienone system, which undergoes elimination of a cyclopentadienone molecule. A parallel with the chemical conversion of arylmethyl-substituted dibenzo(d,f)(1,3)dioxepines into an analogous spirocyclic system was also underlined.     

Synthesis of beta‐proline like derivatives and their evaluation as sodium channel blockers

A simple and convenient procedure for the preparation of beta‐proline like derivatives in their racemic and optically active forms has been reported. The compounds have been screened for their potential activity as sodium channel blockers.     

DFT evidence for a stepwise mechanism in the O-neophyl rearrangement of 1,1-diarylalkoxyl radicals

Hybrid DFT calculations of the potential energy surface (PES) relative to the O-neophyl rearrangement of a series of ring-substituted 1,1-diarylalkoxyl radicals have been carried out at the UB3LYP/6-31G(d) level of theory. On the basis of the computational data, the rearrangement can be described as a consecutive reaction of the type a <--/--> b --> c (see above graphic), and the steady-state approximation could be applied in all cases to the intermediate b. The first-order rearrangement rate constants [kobs = k1k2/(k-1 + k2)] were thus obtained from the computed activation free-energies and were compared with the experimental rate constants measured previously in MeCN solution by laser flash photolysis. An excellent agreement is observed along the two series, which strongly supports the hypothesis that the O-neophyl rearrangement of 1,1-diarylalkoxyl radicals proceeds through the formation of the reactive 1-oxaspiro [2,5]octadienyl radical intermediate. This is in contrast to previous hypotheses that involve either a long-lived intermediate or the absence of this intermediate along the reaction path. The calculated rearrangement free-energies decrease upon going from the methoxy-substituted radical (Delta G degrees = -16.4 kcal x mol-1) to the nitro-substituted one (Delta G degrees = -21.8 kcal x mol-1), which follows a trend that is similar to the one observed for the CAr-O bond dissociation enthalpies (BDEs) of ring-substituted anisoles. This evidence indicates that in the O-neophyl rearrangement the effect of ring substituents on the strength of the newly formed CAr-O bond plays an important role.     

Morphology of bile salt micelles as studied by computer simulation methods

The relative arrangement of the neighboring bile ions and the shape of the hydrophobic and hydrogen-bonded primary micelles as well of the large secondary micelles formed by these ions are analyzed in detail on the basis of molecular dynamics computer simulations of 30 and 300 mM sodium cholate and sodium deoxycholate solutions. In the lower concentration considered, the systems only contain primary micelles, whereas in both of the 300 mM systems secondary micelles are also present. The simulations performed were long enough that the systems reached thermodynamic equilibrium. It is found that the neighboring cholate ions prefer alignments in which their quasi-planar tetracyclic ring systems are parallel with each other, whereas for deoxycholate an opening of the angle between these planes is observed. The shape of the micelles is characterized by the ratio of their three principal moments of inertia. The primary deoxycholate micelles are found to be rather spherical, whereas in the case of cholate somewhat flattened, disklike or oblate shaped ellipsoidal primary micelles are found, irrespective of whether these micelles are kept together by hydrogen bonds or are of hydrophobic origin. Finally, the secondary micelles are found to exhibit a large variety of shapes, ranging from flattened oblates to rodlike objects through various different irregular shapes, characterized by markedly different values of the three principal moments of inertia. The observed preferences of the relative arrangement of the neighboring ions and of the aggregate shapes as well as the differences observed in the behavior of the two bile ions studied in these respects are traced back to the molecular structure of these ions.     

Microscopic structure of phospholipid bilayers: comparison between molecular dynamics simulations and wide-angle X-ray spectra

We present results of molecular dynamics simulations of fully hydrated dipalmitoylphosphatidylcholine and dimyristoylphosphatidylcholine bilayers in the disordered liquid crystalline phase (Lalpha) and compare them to wide-angle X-ray scattering experiments. Though we find a generally good agreement between the simulated and experimental spectra, there are some deviations whose origin has been investigated by a reparametrization of the aliphatic chains' force field. A detailed analysis of the various contribution to the X-ray spectra shows that a non-negligible contribution to the total scattered intensity comes from the headgroups and the head-tail cross correlation.