Surface modification of thermoplastics--towards the plastic biochip for high throughput screening devices

Microarrays have become one of the most convenient tools for high throughput screening, supporting major advances in genomics and proteomics. Other important applications can be found in medical diagnostics, detection of biothreats, drug discovery, etc. Integration of microarrays with microfluidic devices can be highly advantageous in terms of portability, shorter analysis time and lower consumption of expensive biological analytes. Since fabrication of microfluidic devices using traditional materials such as glass is rather expensive, there is great interest in employing polymeric materials as a low cost alternative that is suitable for mass production. A number of commercially available plastic materials were reviewed for this purpose and poly(methylmethacrylate) Zeonor 1060R and Zeonex E48R were identified as promising candidates, for which methods for surface modification and covalent immobilization of DNA oligonucleotides were developed. In addition, we present proof-of-concept plastic-based microarrays with and without integration with microfluidics.     

Unexpected Ti-catalyzed formal intramolecular [4+4] cycloaddition of 1,1′-bi[(S,S)-6-(trimethylsilyl)cyclohepta-2,4-dien-1-yl]

Reductive disilylation (Li+Me₃SiCl−THF) of 1,3,5-cycloheptatriene led to 1,1′-bi[(S^∗,S^∗)-6-(trimethylsilyl)cyclohepta-2,4-dien-1-yl] (2). In the presence of TiCl₄ in dichloromethane, 2 gave rise to a spherical molecule 5 resulting from an intramolecular formal [4+4] supra-supra cycloaddition.     

Infrared characterization of hydroxyl groups on MgO: a periodic and cluster density functional theory study

The infrared OH stretching frequencies of the various types of hydroxyl groups on MgO surfaces have been calculated by periodic (VASP) and cluster (Gaussian) DFT simulations. Surface irregularities (mono and diatomic steps, corners, step divacancies, and kinks) have been considered to model the IR spectra of hydroxylated MgO powders. A good correspondence between calculated and experimental frequencies is obtained with the B3LYP functional. Hydrogen-bonding is the parameter which influences most the IR frequency of OH groups, followed by location of OH groups in concave or convex areas of the surface and then oxygen coordination. The evolution of experimental IR spectra upon evacuation at increasing temperature can be rationalized on the basis of calculated thermal stabilities of each kind of OH groups. A new model is finally proposed to help assign the experimental bands, in terms of hydrogen-bonding, local topology of the hydroxylated sites, and coordination of oxygen.     

Six-fold oxygen-coordinated triplet (S = 1) palladium(II) moieties templated by tris(bipyridine)ruthenium(II) ions

Tris(bipyridine)ruthenium(II) is used as a templating agent to insert palladium(II) into three-dimensional oxalate-based networks. The templated-assembly of [Ru(bpy)(3)][Pd(2)(ox)(3)] (Pd(2)) and [Ru(bpy)(3)][PdMn(ox)(3)] (PdMn) is described. The latter compound is structurally characterized by powder X-ray diffraction and X-ray absorption spectroscopy. These techniques reveal an unusual 6-fold oxygen environment around the Pd(II) atoms with two short (2.02 Angstrom) and four long (2.17 Angstrom) Pd-O distances. As stated by magnetometry, this environment is associated with a triplet ground state (S = 1) of the palladium(II) ion: when the temperature is decreased, the chiMT product shows a monotonous decrease from 5.54 cm(3) K mol(-1) at 300 K, a value which is slightly lower than the one expected for independent paramagnetic Pd(II) (S = 1, g = 2) and Mn(II) (S = 5/2, g = 2) ions. This thermal variation is due to antiferromagnetic exchange interactions between the two spin bearers. Nevertheless, no long-range magnetic order is detected down to 2 K. These results are confirmed by an analysis of the [MII(C(2)O(4))(3)](4-) (M = Ni, Pd, Pt) complex and of a [Pd(II){mu-(C(2)O(4))Mn(II)(OH(2))(4)}(3)](2+) tetranuclear model using density functional theory.     

Combined wavelet transform-artificial neural network use in tablet active content determination by near-infrared spectroscopy

The pharmaceutical industry faces increasing regulatory pressure to optimize quality control. Content uniformity is a basic release test for solid dosage forms. To accelerate test throughput and comply with the Food and Drug Administration's process analytical technology initiative, attention is increasingly turning to nondestructive spectroscopic techniques, notably near-infrared (NIR) spectroscopy (NIRS). However, validation of NIRS using requisite linearity and standard error of prediction (SEP) criteria remains a challenge. This study applied wavelet transformation of the NIR spectra of a commercial tablet to build a model using conventional partial least squares (PLS) regression and an artificial neural network (ANN). Wavelet coefficients in the PLS and ANN models reduced SEP by up to 60% compared to PLS models using mathematical spectra pretreatment. ANN modeling yielded high-linearity calibration and a correlation coefficient exceeding 0.996.     

FTIR spectroscopy in medical mycology: applications to the differentiation and typing of <Emphasis Type="Italic">Candida</Emphasis>

The incidence of fungal infections, in particular candidiasis and aspergillosis, has considerably increased during the last three decades. This is mainly due to advances in medical treatments and technologies. In high risk patients (e.g. in haematology or intensive care), the prognosis of invasive candidiasis is relatively poor. Therefore, a rapid and correct identification of the infectious agent is important for an efficient and prompt therapy. Most clinical laboratories rely on conventional identification methods that are based on morphological, physiological and nutritional characteristics. However, these have their limitations because they are time-consuming and not always very accurate. Moreover, molecular methods may be required to determine the genetic relationship between the infectious strains, for instance in Candida outbreaks. In addition, the latter methods require time, expensive consumables and highly trained staff to be performed adequately. In this study, we have applied the FTIR spectroscopic approach to different situations encountered in routine mycological diagnosis. We show the potentials of this phenotypic approach, used in parallel with routine identification methods, for the differentiation of 3 frequently encountered Candida species (C. albicans, C. glabrata and C. krusei) by using both suspensions and microcolonies. This approach, developed for an early discrimination, may help in the initial choice of antifungal treatment. Furthermore, we demonstrate the feasibility of the method for intraspecies comparison (typing) of 3 Candida species (C. albicans, C. glabrata and C. parapsilosis), particularly when an outbreak is suspected.     

Bounds for modular L-functions in the level aspect

Let f be a primitive (holomorphic or Maaß) cusp form of level q and non-trivial nebentypus. Then for the associated L-function satisfies , where the implied constant depends polynomially on s and the Archimedean parameters of f (weight or Laplacian eigenvalue).