Comment on “Bad Language”: Resolving some Ambiguities about Chirality

In this comment on the Essay entitled “Bad Language” by Dunitz I add new elements which enlighten the discussion. I hope that they contribute to suppress ambiguities and preconceived ideas about chirality.     

Characterization of Radical SAM Adenosylhopane Synthase,HpnH, which Catalyzes the 5′‐Deoxyadenosyl Radical Addition to Diploptene in the Biosynthesis of C35 Bacteriohopanepolyols

Adenosylhopane is a crucial intermediate in the biosynthesis of bacteriohopanepolyols, which are widespread prokaryotic membrane lipids. Herein, it is demonstrated that reconstituted HpnH, a putative radical S‐adenosyl‐l ‐methionine (SAM) enzyme, commonly encoded in the hopanoid biosynthetic gene cluster, converts diploptene into adenosylhopane in the presence of SAM, flavodoxin, flavodoxin reductase, and NADPH. NMR spectra of the enzymatic reaction product were identical to those of synthetic (22R)‐adenosylhopane, indicating that HpnH catalyzes stereoselective C?C formation between C29 of diploptene and C5′ of 5′‐deoxyadenosine. Further, the HpnH reaction in D₂O‐containing buffer revealed that a D atom was incorporated at the C22 position of adenosylhopane. Based on these results, we propose a radical addition reaction mechanism catalyzed by HpnH for the formation of the C₃₅ bacteriohopane skeleton.     

Hybrid classical quantum force field for modeling very large molecules

A coherent computational scheme on a very large molecule in which the subsystem that undergoes the most important electronic changes is treated by a semiempirical quantum chemical method, though the rest of the molecule is described by a classical force field, has been proposed recently. The continuity between the two subsystems is obtained by a strictly localized bond orbital, which is assumed to have transferable properties determined on model molecules. The computation of the forces acting on the atoms is now operating, giving rise to a hybrid classical quantum force field (CQFF ) which allows full energy minimization and modeling chemical changes in large biomolecules. As an illustrative example, we study the short hydrogen bonds and the proton-exchange process in the histidine-aspartic acid system of the catalytic triad of human neutrophil elastase. The CQFF approach reproduces the crystallographic data quite well, in opposition to a classical force field. The method also offers the possibility of switching off the electrostatic interaction between the quantum and the classical subsystems, allowing us to analyze the various components of the perturbation exerted by the macromolecule in the reactive part. Molecular dynamics confirm a fast proton exchange between the three possible energy wells. The method appears to be quite powerful and applicable to other cases of chemical interest such as surface reactivity of nonmetallic solids. © 1996 John Wiley & Sons, Inc.     

Pyirolothieno[1,4]diazepines. Part IV. First synthesis of pyrrolo-[1,2-a]thieno[2,3-f][1,4]diazepine Derivatives

Treatment of 3-(2-formyl-1H-pyrrol-1-yl)-2-thiophenecarboxamide by various nucleophiles like methyl ketones, amines, alcohols, thiols or acetates led to new 5,6-dihydro-4H-pyrrolo[1,2-a]thieno-[2,3-f][1,4]diazepines.     

Nucleotide Analogues Bearing a C2′ or C3′-Stereogenic All-Carbon Quaternary Center as SARS-CoV-2 RdRp Inhibitors

The design of novel nucleoside triphosphate (NTP) analogues bearing an all-carbon quaternary center at C2′ or C3′ is described. The construction of this all-carbon stereogenic center involves the use of an intramoleculer photoredox-catalyzed reaction. The nucleoside analogues (NA) hydroxyl functional group at C2′ was generated by diastereoselective epoxidation. In addition, highly enantioselective and diastereoselective Mukaiyama aldol reactions, diastereoselective N-glycosylations and regioselective triphosphorylation reactions were employed to synthesize the novel NTPs. Two of these compounds are inhibitors of the RNA-dependent RNA polymerase (RdRp) of SARS-CoV-2, the causal virus of COVID-19.     

基于耦合道Gamow壳模型计算17O和17F的能谱以及16O(p,p)反应的微分散射截面

利用耦合道Gamow壳模型计算了17O和17F的低激发能谱以及16O(p,p)反应的低能弹性散射截面。结果表明,17O和17F中非束缚共振态能级的核子发射宽度的计算需要合理地考虑连续态耦合效应。计算得到的17O和17F的低激发能谱以及16O(p,p)反应的低能弹性散射激发函数都与实验数据吻合较好。这说明基于现实核力的计算可更好地描述16O(p,p)反应的低能弹性散射截面。     

Pulsed,Crossed, Supersonic Molecular Beam Studies of Refractory Atom Reactions

Dynamics of refractory atom reactions have been studied with a crossed beam apparatus combining two pulsed, supersonic molecular beam sources, a pulsed UV laser for creating the refractory atoms in the gas phase by laser ablation, and a pulsed dye laser to probe the reaction products by laser-induced fluorescence. Examples of the A1(²P_j) + O₂(X³∑_g)→ A10(X²∑⁺) + O(³P_j), Mg(¹S_o) + N₂O(X¹∑⁺) → MgO(X¹∑⁺,a³Π) + N₂(X¹∑_g⁺) andC(³P_j) + NO(X²Π_r) → CN(X²∑⁺) + 0(³P_j) systems are given. Comparisons with the studies performed using the conventional steady-state beam approach are made.