Selective and efficient electrocatalytic way to spirobarbituric dihydrofurans

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The first synthesis of spirocyclopentyl derivatives of lupane triterpenoids by radical nitrocyclization of C-2-diallyl substituted betulonates

Radical cyclization of the 1,6-hexadiene moiety in 2,2-diallyl substituted methyl or benzyl dihydrobetulonates initiated by Fe(NO₃)₃·9H₂O in the presence of FeCl₃ or LiCl gave hitherto unknown spirocyclic compounds in which ring A of the lupane triterpenoid at position C-2 is spiro coupled with a vicinally substituted nitromethyl- and chloromethylcyclopentane. Based on a quantum-chemical assessment of the energy characteristics of this reaction, the most probable configurations of the chiral atoms in the spirocyclopentane ring were determined for the major diastereomers isolated in individual form.     

A graph-theoretical kinetic Monte Carlo framework for on-lattice chemical kinetics

Existing kinetic Monte Carlo (KMC) frameworks for the simulation of adsorption, desorption, diffusion, and reaction on a lattice often assume that each participating species occupies a single site and represent elementary events involving a maximum of two sites. However, these assumptions may be inadequate, especially in the case of complex chemistries, involving multidentate species or complex coverage and neighboring patterns between several lattice sites. We have developed a novel approach that employs graph-theoretical ideas to overcome these challenges and treat easily complex chemistries. As a benchmark, the Ziff-Gulari-Barshad system is simulated and comparisons of the computational times of the graph-theoretical KMC and a simpler KMC approach are made. Further, to demonstrate the capabilities of our framework, the water-gas shift chemistry on Pt(111) is simulated.     

Energetics of a protein disorder–order transition in small molecule recognition

Many proteins recognise other proteins via mechanisms that involve the folding of intrinsically disordered regions upon complex formation. Here we investigate how the selectivity of a drug-like small molecule arises from its modulation of a protein disorder-to-order transition. Binding of the compound AM-7209 has been reported to confer order upon an intrinsically disordered ‘lid’ region of the oncoprotein MDM2. Calorimetric measurements revealed that truncation of the lid region of MDM2 increases the apparent dissociation constant of AM-7209 250-fold. By contrast, lid truncation has little effect on the binding of the ligand Nutlin-3a. Insights into these differential binding energetics were obtained via a complete thermodynamic analysis that featured adaptive absolute alchemical free energy of binding calculations with enhanced-sampling molecular dynamics simulations. The simulations reveal that in apo MDM2 the ordered lid state is energetically disfavoured. AM-7209, but not Nutlin-3a, shows a significant energetic preference for ordered lid conformations, thus shifting the balance towards ordering of the lid in the AM-7209/MDM2 complex. The methodology reported herein should facilitate broader targeting of intrinsically disordered regions in medicinal chemistry.

Molecular simulations and biophysical measurements elucidate why the ligand AM-7209 orders a disordered region of the protein MDM2 on binding. This work expands strategies available to medicinal chemists for targeting disordered proteins.     

The problem of irreversibility in Newtonian dynamics

A new type of dissipation function which does not satisfy the Lipschitz condition at equilibrium states is proposed. It is shown that Newtonian dynamics supplemented by this dissipation function becomes irreversible, i.e., it is not invariant with respect to time inversion. Some effects associated with the approaching of equilibria in infinite time are eliminated. New meanings of chaos and turbulence are discussed.     

From Biomass‐Derived Furans to Aromatics with Ethanol over Zeolite

We report a novel catalytic conversion of biomass‐derived furans and alcohols to aromatics over zeolite catalysts. Aromatics are formed via Diels–Alder cycloaddition with ethylene, which is produced in situ from ethanol dehydration. The use of liquid ethanol instead of gaseous ethylene, as the source of dienophile in this one‐pot synthesis, makes the aromatics production much simpler and renewable, circumventing the use of ethylene at high pressure. More importantly, both our experiments and theoretical studies demonstrate that the use of ethanol instead of ethylene, results in significantly higher rates and higher selectivity to aromatics, due to lower activation barriers over the solid acid sites. Synchrotron‐diffraction experiments and proton‐affinity calculations clearly suggest that a preferred protonation of ethanol over the furan is a key step facilitating the Diels–Alder and dehydration reactions in the acid sites of the zeolite.     

Wetting films on a hydrophilic silica surface obtained from aqueous solutions of hydrophobically modified inulin polymeric surfactant

The thickness of wetting films on a hydrophilic silica surface was investigated using a microinterferometric technique. Aqueous solutions of hydrophobically modified inulin (INUTEC^®SP1) at various concentrations, in the presence or absence of NaCl or Na₂SO₄, were studied. The equilibrium film thickness (h _eq) showed a complex dependence on INUTEC^®SP1 concentration. At low electrolyte concentrations, h _eq decreased with an increase in INUTEC^®SP1 concentration, reaching a minimum at 10^?6 mol dm^?3. However, at high electrolyte concentrations, this dependence became less pronounced. At any given INUTEC^®SP1 concentration, the equilibrium film thickness decreased with an increase in electrolyte concentration as a result of the compression of the electrical double layer reaching a minimum value. After that, the film thickness showed a small decrease with further increase in electrolyte concentration. This indicates that the electrostatic component of disjoining pressure can be neglected, and the steric repulsion of the loops and tails of INUTEC^®SP1 determined the film thickness.     

Development and validation of a liquid chromatographic method for the determination of hydroxymethylfurfural and alpha-ketoglutaric acid in human plasma

Hydroxymethylfurfural (HMF) and alpha-ketoglutaric acid (KG) have been recently investigated as potential cancer cell damaging agents. We herein report for the first time a validated quantitative assay for their simultaneous determination in human plasma which is amenable to be applied in the future screening of the target compounds in human probands in order to properly design a targeted chemotherapeutic regimen for certain types of malignant tumors.A simple liquid chromatographic method in conjunction to derivatization after a two-step optimized solid phase clean-up procedure is described. The method is based on the reaction of HMF and KG with 2-nitrophenylhydrazine or 2,4-dinitrophenylhydrazine in an aqueous environment. Reaction conditions were studied with respect to pH, reagent volume, reaction temperature and time. Exact testing of such parameters beside careful selection of the mobile phase composition rendered feasible the quantification of the chemically significantly differing analytes along a single chromatographic run. The formed derivatives could be separated isocratically by reversed-phase LC on a C₈-column. Detection in the UV and in the visible range is possible. Results showed good recovery and reproducibility with detection limits (S/N = 3) down to 2 picomoles analyte on column. Resolution of the syn and anti geometric isomers of the HMF and KG derivatives is possible. The isomeric ratio in relation to the reaction pH is discussed.