Rates of base-catalysed cleavage of pyridyl-, quinolyl-, picolyl- and (quinolylmethyl)-trimethylsilanes

Rates of cleavage of some picoyl- and (quinolylmethyl)-trimethylsilanes (RSiMe₃, where R = PyCH₂ or QnCH₂SiMe₃) have been measured in “90%” aqueous methanolic sodium methoxide at 50°C. Relative reactivities are: 2-PyCH₂, 1.0; 3-PyCH₂, 0.030; 4-PyCH₂, 8.9; 2-QnCH₂, 41; 3-QnCH₂, 0.161; 4-QnCH₂, 37. The rates correlate well with those for base-catalysed hydrogen-exchange in the parent carbon acids RH. Approximate pK_a's (based on the scale of ion-pair acidities in CsNHC₆H₁₁H₂NC₆H₁₁, with pK_a of 9-phenylfluorene = 18.6) for the carbon acids, RH, can be derived as follows: 2-PyCH₃, 29.5; 3-PyCH₃, 34; 4-PyCH₃, 27; 2-QnCH₃, 25; 3-QnCH₃, 32; 4-QnCH₃, 25.Rates of cleavage of pyridyl- and quinolyl-trimethylsilanes (PySiMe₃ and QnSiMe₃) by sodium hydroxide in 4 : 1 v/v Me₂SO/H₂O at 50°C have also been measured; and the relative reactivities are: 2-Py, 1.0; 3-Py, 2.9; 4-Py, 8.4; 2-Qn, 15.9; 3-Qn, 12.7; 4-Qn, 184. The sequence of reactivity differes from that for base-catalysed hydrogen-exchange at the relevant positions of pyridine and quinoline, indicating that the reactivities are not determined in both cases (if in either) solely by the stabilities of the corresponding carbanions.     

The reaction of N-aminophthalimide with isothiocyanates

N-Aminophthalimide ( I ) reacted in refluxing isopropyl alcohol with a number of isothiocyanates to give the related 1:1 addition products, N-(3-substitutedthioureido)phthalimides III. On the other hand, heating I directly with an excess of neat arylisothiocyanates produced the N-arylphthalimides IV. As shown for IIIa, the 1:1 addition products are conveniently deblocked by the Ing-Manske procedure to yield the 4-substituted thiosemicarbazide.     

An improved procedure for the preparation of 2-amino-8-alkylpyrido-[2,3-d]pyrimidin-4(3H)-ones (8-alkyl-N5-deazapterins)

We report an improved procedure for the preparation of 8-alkyl-N5-deazapterins which allows clean preparation of all ring-methyl substituted compounds, including 5- and 7-methyl substituted compounds. The procedure was also successfully applied to the preparation of N5-deazapterins with improved yield over previous reports. The uv/visible and pKa data confirm the predicted increased basicity of 8-alkyl-N5-deazapterins compared with the N5-deazapterin parents, and indicate that N5-deazapterins protonate on N8 and 8-alkyl-N5-deazapterins protonate on N3.     

Selective excitation effects in microwave optical double resonance and phosphorescence spectroscopy of molecular crystals

The photoexcitation routes used to produce molecular crystal, triplet states are shown to have important optical and microwave spectral consequences. 2-benzoylpyridine crystals at 4.2 K have T₁ → S₀ phosphorescence spectra showing line width dependence on whether initial production of the T₁ state is through direct T₁ → S₀ absorption, or through S₁ ← S₀ absorption followed by S₁ → T₁ intersystem crossing. Striking differences are seen in the optically detected zero-field resonance spectra.     

Density-functional-theory studies of the infrared spectra of titanium carbide nanocrystals

The infrared (IR) spectra of cuboidic titanium carbide (TiC) nanocrystals have been studied at the density-functional-theory (DFT) level using the Becke-Perdew (BP) functional and triple-zeta quality basis sets augmented by one set of polarization functions (TZVP). The accuracy of the calculations was checked by DFT calculations using the Perdew-Burke-Ernzerhof hybrid functional (PBE0) and up to quadruple-zeta quality basis sets augmented by one set of polarization functions (QZVP). The calculated IR spectrum for Ti(14)C(13) (3 x 3 x 3) is found to be in fair agreement with the experimental IR spectrum obtained by infrared resonance-enhanced multiphoton ionization (IR-REMPI) measurements, whereas, for Ti(18)C(18) (4 x 3 x 3) and Ti(32)C(32) (4 x 4 x 4), the calculated IR spectra differ significantly from the experimental ones. The smallest TiC cluster (Ti(4)C(4), 2 x 2 x 2) considered has not been reported in any mass-spectrometer studies. The present DFT calculations show that the vibrational modes related to the in-plane vibrations of solid TiC are not observed in the IR-REMPI spectra of nanocrystals larger than Ti(14)C(13). Contrary to solid TiC, the studied TiC nanocrystals are nonmetallic with optical gaps of 0.62 eV (0.55 eV) and 0.028 eV (0.027 eV) for Ti(32)C(32) and Ti(108)C(108) (6 x 6 x 6), calculated at the time-dependent density-functional-theory (TDDFT) level using the BP functional. The HOMO-LUMO gaps obtained in the BP DFT calculations are given within parentheses. At the PBE0 DFT level, the HOMO-LUMO gaps for Ti(32)C(32) and Ti(108)C(108) are 1.74 and 0.32 eV, respectively.     

Mutagenesis approaches to deduce structure-function relationships in terpene synthases

This review highlights mutagenesis studies of terpene synthases, specifically sesquiterpene synthases and oxidosqualene cyclases. Mutagenesis studies of these enzymes have provided mechanistic insights, structure-function relationships for specific enzymatic residues, novel terpene structures and enzymes with novel activities. The literature through 2002 is reviewed and 113 references cited.     

Rearrangement during cyclisation of some 3-(2-pyrrolyl) propionic acids and related compounds

Cyclisation of the title compounds leads to mixtures of the expected 4H-cyclopental[b]pyrrol-4-ones (1), the corresponding 6-ones (3) by a single rearrangement, and the cyclopenta[c]pyrrol-4-ones (4) by a double rearrangement, the proportions depending upon the substituents.The ¹H NMR spectra of 2-methyl-4H-cyctopenta[b]thiophen-6-one (3f) shows 6J long range $\text{CH}{}_3\text{CH}{}_2$ coupling, but this is absent in the corresponding pyrroles (3c,d). The ¹³C spectra of 1 and 3 cannot be interpreted on the basis of substituent chemical shifts in pyrroles and thiophens, and are clearly -CH = CH-X (X = NMe, NPh, S) bridged derivatives of cyclopent-2-enone.     

Symmetry breaking in the Hartree–Fock approximation for binuclear transition metal compounds—a theoretical investigation based on a variable model operator

The validity of the Hartree–Fock (HF ) approximation in bis(π-pentadienyl)dinickel ( 1 ) and in cyclopentadienyl-allyl-cyclobutadiene-dinickel ( 2 ) has been investigated by means of the Thouless instability conditions in the computational framework of a variable model Hamiltonian. Singlet, nonsinglet (triplet), and nonreal instabilities in 1 and 2 have been studied as a function of the one-electron resonance integral β and as a function of the one- and two-center elements of the electron–electron interaction. The one-center integrals of Coulomb (γ) and exchange-type (K) have been modified by a multiplicative factor; the two-center integrals (γ) have been calculated by means of an exponential interpolation formula with a variable decay amplitude. Additionally the Thouless conditions have been studied for nuclear deformations. The stability domain of the HF solution in the model space spanned by the variable INDO Hamiltonian has been analyzed. The nature of the many-body interactions in the unstable region depends strongly on the parametrization of the model operator. HF instabilities in the high-density region (long-range forces) of 1 have their origin in individual particle–hole fluctuations while negative roots for short-range forces (low-density region) are similar to collective excitations in many-body systems (strong off-diagonal coupling). The opposite behavior is encountered in the Ni complex 2 . The physical origin of these different types of correlation processes are analyzed in a simple two-electron two-orbital model. The nature of the HF fluctuations in 1 and 2 , the importance of spatial and spin correlation, and the coupling of symmetry breaking of the electronic wave function with nuclear deformations are compared with the nature of phase transitions in solid-state systems.     

Macromolecule encapsulation in diazoresin-based hollow polyelectrolyte microcapsules

A stable enzyme encapsulation technique based on the conversion of weak interactions between diazo resin/poly(styrene sulfonate) to covalent bonds was explored. Photosensitive diazoresin-based polyelectrolyte microcapsules were prepared via layer-by-layer electrostatic self-assembly of poly(styrene sulfonate) and diazoresin on MnCO(3) templates. UV-vis and zeta-potential measurements confirmed the alternate deposition of {PSS/DAR} multilayers on the micrometer-sized dissolvable templates. The DAR-based microcapsules were demonstrated to be permeable to enzymes prior to UV irradiation, while the permeability of the multilayer wall was changed substantially after photo-cross-linking. Encapsulated molecules were stably entrapped after UV irradiation, as shown by confocal microscopy and atomic force microscopy images. Activity assays revealed that encapsulated glucose oxidase possessed 52.8% of the catalytic activity exhibited by the same amount of free enzyme, proving the preservation of native conformation and accessibility of substrate. This encapsulation technique is promising for many biomedical and biotechnological applications, particularly enzyme biosensors, which require stable immobilization of functional components while allowing sufficient transport rates for substrate molecules.     

Evaluation of Poisson solvation models using a hybrid explicit/implicit solvent method

Implicit solvent methods have become popular tools in the field of protein dynamics simulations, yet evaluation of their validity has been primarily limited to comparisons with experimental and theoretical data for small molecules. In this paper, we use a recently developed hybrid explicit/implicit solvent methodology to evaluate the accuracy of several Poisson-based implicit solvent models. Specifically, we focus on the calculation of electrostatic solvation free energies of various fixed conformations for two proteins. We show that, among various dielectric boundary definitions, the Lee-Richards molecular surface has the best agreement with hybrid solvent results. Furthermore, certain modifications of the molecular surface Poisson protocol provide varied results. For instance, simple modifications of atomic radii on charged residues generally improve absolute errors but do not significantly reduce relative errors among conformations. On the other hand, using a water-probe radius of 1.0 A, as opposed to the standard value of 1.4 A, to generate the molecular surface, moderately improves both absolute and relative results.