The coherent-constructible correspondence and Fourier-Mukai transforms

As evidence for his conjecture in birational log geometry, Kawamata constructed a family of derived equivalences between toric orbifolds. In a previous paper, the authors showed that the derived category of a toric orbifold is naturally identified with a category of polyhedrally-constructible sheaves on ℝ ⁿ . In this paper we investigate and reprove some of Kawamata’s results from this perspective.     

Mutually orthogonal equitable Latin rectangles

Let ab=n². We define an equitable Latin rectangle as an a×b matrix on a set of n symbols where each symbol appears either or times in each row of the matrix and either or times in each column of the matrix. Two equitable Latin rectangles are orthogonal in the usual way. Denote a set of ka×b mutually orthogonal equitable Latin rectangles as a k– MOELR (a,b;n). When a≠9,18,36, or 100, then we show that the maximum number of k– MOELR (a,b;n)≥3 for all possible values of (a,b).     

The Hamilton-Waterloo Problem with 4-Cycles and a Single Factor of n-Cycles

A 2-factor in a graph G is a 2-regular spanning subgraph of G, and a 2-factorization of G is a decomposition of all the edges of G into edge-disjoint 2-factors. A ${\{C_{m}^{r}, C_{n}^{s}\}}$ -factorization of K _υ asks for a 2-factorization of K _υ , where r of the 2-factors consists of m-cycles, and s of the 2-factors consists of n-cycles. This is a case of the Hamilton-Waterloo problem with uniform cycle sizes m and n. If υ is even, then it is a decomposition of K _υ ? F where a 1-factor F is removed from K _υ . We present necessary and sufficient conditions for the existence of a ${\{C_{4}^{r}, C_{n}^{1}\}}$ -factorization of K _υ ? F.     

Ultrasonic pretreatment of corn slurry for saccharification: A comparison of batch and continuous systems

The effects of ultrasound on corn slurry saccharification yield and particle size distribution was studied in both batch and continuous-flow ultrasonic systems operating at a frequency of 20 kHz. Ground corn slurry (28% w/v) was prepared and sonicated in batches at various amplitudes (192–320 μm_{peak-to-peak (p–p)}) for 20 or 40 s using a catenoidal horn. Continuous flow experiments were conducted by pumping corn slurry at various flow rates (10–28 l/min) through an ultrasonic reactor at constant amplitude of 12 μm_p–p. The reactor was equipped with a donut shaped horn. After ultrasonic treatment, commercial alpha- and gluco-amylases (STARGEN^TM 001) were added to the samples, and liquefaction and saccharification proceeded for 3 h. The sonicated samples were found to yield 2–3 times more reducing sugars than unsonicated controls. Although the continuous flow treatments released less reducing sugar compared to the batch systems, the continuous flow process was more energy efficient. The reduction of particle size due to sonication was approximately proportional to the dissipated ultrasonic energy regardless of the type of system used. Scanning electron microscopy (SEM) images were also used to observe the disruption of corn particles after sonication. Overall, the study suggests that both batch and continuous ultrasonication enhanced saccharification yields and reduced the particle size of corn slurry. However, due to the large volume involve in full scale processes, an ultrasonic continuous system is recommended.     

Brain-derived neurotrophic factor modulation of Kv1.3 channel is disregulated by adaptor proteins Grb10 and nShc

Background  

Neurotrophins are important regulators of growth and regeneration, and acutely, they can modulate the activity of voltage-gated ion channels. Previously we have shown that acute brain-derived neurotrophic factor (BDNF) activation of neurotrophin receptor tyrosine kinase B (TrkB) suppresses the Shaker voltage-gated potassium channel (Kv1.3) via phosphorylation of multiple tyrosine residues in the N and C terminal aspects of the channel protein. It is not known how adaptor proteins, which lack catalytic activity, but interact with members of the neurotrophic signaling pathway, might scaffold with ion channels or modulate channel activity.     

The combinatorial game Nofil played on Steiner triple systems

We introduce an impartial combinatorial game on Steiner triple systems called Next One to Fill Is the Loser (Nofil ). Players move alternately, choosing points of the triple system. If a player is forced to fill a block on their turn, they lose. By computing nim-values, we determine optimal strategies for Nofil on all Steiner triple systems up to order 15 and a sampling for orders 19, 21 and 25. The game Nofil can be thought of in terms of play on a corresponding hypergraph which will become a graph during play. At that point Nofil is equivalent to playing the game Node Kayles on the graph. We prove necessary conditions and sufficient conditions for a graph to reached playing Nofil. We conclude that the complexity of determining the outcome of the game Nofil on Steiner triple systems is PSPACE-complete for randomized reductions.     

Ultrasonic absorption in polymer gel dosimeters

Ultrasonic absorption in polymer gel dosimeters was investigated. An ultrasonic interferometer was used to study the frequency (f) dependence of the absorption coefficient (alpha) in a polyacrylamide gel dosimeter (PAG) in the frequency range 5-20 MHz. The frequency dependence of ultrasonic absorption deviated from that of an ideal viscous fluid. The presence of relaxation mechanisms was evidenced by the frequency dependence of alpha/f(2) and the dispersion in ultrasonic velocity. It was concluded that absorption in polymer gel dosimeters is due to a number of relaxation processes which may include polymer-solvent interactions as well as relaxation due to motion of polymer side groups.The dependence of ultrasonic absorption on absorbed dose and formulation was also investigated in polymer gel dosimeters as a function of pH and chemical composition. Changes in dosimeter pH and chemical composition resulted in a variation in ultrasonic dose response curves. The observed dependence on pH was considered to be due to pH induced modifications in the radiation yield while changes in chemical composition resulted in differences in polymerisation kinetics.     

Aliphatic hydroxylation and epoxidation of capsaicin by cytochrome P450 CYP505X

Microbial cytochrome P450 enzymes (CYPs) are able to mimic the metabolism of human CYPs. One challenge is to identify the respective drug metabolites and to compare substrate specificities to those of the human enzymes. In this study, a class VIII self-sufficient CYP from Aspergillus fumigatus (CYP505X) and variants of this enzyme were heterologously expressed in E. coli. The substrate scope of the variants was determined using active pharmaceutical ingredients (APIs) and (hetero)cyclic compounds. Capsaicin – the active compound in chili peppers – was oxidized most efficiently (4.36?μM/min) in a whole cell mediated biotransformation. The products were isolated, purified and their structures elucidated by 1D and 2D NMR. The two major metabolites showed modifications on the lipophilic side chain. Specifically, capsaicin was hydroxylated at position 8 to give (E)-8-hydroxy-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide and epoxidized at the double bond to give N-(4-hydroxy-3-methoxybenzyl)-5-(3-isopropyloxiran-2-yl)-pentanamide.     

Efficient Detection of Phthalate Esters in Human Saliva via Fluorescence Spectroscopy

The detection of phthalates in human biologic fluids remains an important research objective because it provides an important measure of an individual’s exposure to this class of compounds, which have known deleterious health effects. Moreover, the ability to accomplish such detection in fluids that are easy to collect, such as saliva and urine, provides additional practical advantages. Reported herein is the application of cyclodextrin-promoted fluorescence energy transfer and fluorescence modulation to accomplish precisely such detection: the development of sensitive and selective florescence-based detection methods for phthalates in saliva, an easily collectable human biologic fluid. Such saliva-based detection methods occur with high levels of selectivity (100% differentiation) and sensitivity (limits of detection as low as 0.089?µM), and provide significant potential in the development of practical phthalate detection devices.