A reverse donor-acceptor bistable [2]catenane

A [2]catenane, composed of a pi-electron-rich bis-1,5-dioxynaphthalene[38]crown10 (BDNP38C10) ring, mechanically interlocked with a large macrocycle containing two disubstituted tetraarylmethane "speed bumps" and two different pi-electron-deficient units--namely, naphthalene dimide (NpI) and bipyridinium (BIPY(2+)) units--has been synthesized from a [2]rotaxane, containing the former recognition unit, after performing two sequential Cu(I)-catalyzed azide-alkyne cycloadditions with a linker containing the latter recognition unit. The product, which exists as a single co-conformer, wherein the BDNP38C10 ring encircles the NpI unit, undergoes equilibration to give approximately equal amounts of the other co-conformer in which the BDNP38C10 ring encircles the BIPY(2+) unit.     

Symmetric Tardos fingerprinting codes for arbitrary alphabet sizes

Fingerprinting provides a means of tracing unauthorized redistribution of digital data by individually marking each authorized copy with a personalized serial number. In order to prevent a group of users from collectively escaping identification, collusion-secure fingerprinting codes have been proposed. In this paper, we introduce a new construction of a collusion-secure fingerprinting code which is similar to a recent construction by Tardos but achieves shorter code lengths and allows for codes over arbitrary alphabets. We present results for ‘symmetric’ coalition strategies. For binary alphabets and a false accusation probability , a code length of symbols is provably sufficient, for large c ₀, to withstand collusion attacks of up to c ₀ colluders. This improves Tardos’ construction by a factor of 10. Furthermore, invoking the Central Limit Theorem in the case of sufficiently large c ₀, we show that even a code length of is adequate. Assuming the restricted digit model, the code length can be further reduced by moving from a binary alphabet to a q-ary alphabet. Numerical results show that a reduction of 35% is achievable for q = 3 and 80% for q = 10.      

Eutectic Molten Salt Synthesis of Highly Microporous Macrocyclic Porous Organic Polymers for CO2 Capture

The development of porous materials is of great interest for the capture of CO₂ from various emission sources, which is essential to mitigate its detrimental environmental impact. In this direction, porous organic polymers (POPs) have emerged as prime candidates owing to their structural tunability, physiochemical stability and high surface areas. In an effort to transfer an intrinsic property of a cyclotetrabenzoin-derived macrocycle – its high CO₂ affinity – into porous networks, herein we report the synthesis of three-dimensional (3D) macrocycle-based POPs through the polycondensation of an octaketone macrocycle with phenazine-2,3,7,8-tetraamine hydrochloride. This polycondensation was performed under ionothermal conditions, using a eutectic salt mixture in the temperature range of 200 to 300 °C. The resulting polymers, named 3D-mmPOPs, showed reaction temperature-dependent surface areas and gas uptake properties. 3D-mmPOP-250 synthesized at 250 °C exhibited a surface area of 752 m² g⁻¹ and high microporosity originating from the macrocyclic units, thus resulting in an excellent CO₂ binding enthalpy of 40.6 kJ mol⁻¹ and CO₂ uptake capacity of 3.51 mmol g⁻¹ at 273 K, 1.1 bar.     

Electrochemical technologies for the treatment of pesticides

Pesticides are used worldwide in large quantities to increase yield in agriculture. On the other hand, they are in general toxic/persistent organic pollutants presenting strong adverse effects to the environment and human health, including acute and chronic toxicity. Consequently, water polluted by pesticides should be treated efficiently before its release into receiving water bodies to protect the natural aquatic environment. Different methods have been used for the treatment of water contaminated by pesticides. Among them, electrochemical technology seems to be very efficient in removing pesticides from water. Therefore this review aims to provide an overview of the recent works on the treatment of pesticide wastewater using electrochemical technology with a special focus on electrochemical advanced oxidation processes that demonstrated high efficiency in the removal of various types of pesticides from contaminated water.     

Cytotoxic and apoptotic potential of some coumarin and 2-amino-3-carbonitrile selenophene derivatives in prostate cancer

3-acetyl coumarin derivatives (1a-d) are formed as a result of condensation of salicylaldehyde derivatives and ethyl acetoacetate and were converted into coumarin-selenophene hybrid compounds (2a-d) in the basic medium by modified Gewald reaction in the presence of malononitrile and selenium. Products are characterized by nuclear magnetic resonance (NMR). The prepared compounds are screened for their anticancer activity against DU-145 cell line. In addition, selected target compounds are evaluated for apoptosis and oxidative stress on DU-145 (prostate carcinoma) cell lines.     

SYN-View: A Phylogeny-Based Synteny Exploration Tool for the Identification of Gene Clusters Linked to Antibiotic Resistance

The development of new antibacterial drugs has become one of the most important tasks of the century in order to overcome the posing threat of drug resistance in pathogenic bacteria. Many antibiotics originate from natural products produced by various microorganisms. Over the last decades, bioinformatical approaches have facilitated the discovery and characterization of these small compounds using genome mining methodologies. A key part of this process is the identification of the most promising biosynthetic gene clusters (BGCs), which encode novel natural products. In 2017, the Antibiotic Resistant Target Seeker (ARTS) was developed in order to enable an automated target-directed genome mining approach. ARTS identifies possible resistant target genes within antibiotic gene clusters, in order to detect promising BGCs encoding antibiotics with novel modes of action. Although ARTS can predict promising targets based on multiple criteria, it provides little information about the cluster structures of possible resistant genes. Here, we present SYN-view. Based on a phylogenetic approach, SYN-view allows for easy comparison of gene clusters of interest and distinguishing genes with regular housekeeping functions from genes functioning as antibiotic resistant targets. Our aim is to implement our proposed method into the ARTS web-server, further improving the target-directed genome mining strategy of the ARTS pipeline.     

Parallel variable neighbourhood search algorithms for job shop scheduling problems

^** Email: msevkli{at}fatih.edu.tr^*** Corresponding author. Email: mehmetaydin{at}acm.org, mehmet.aydin{at}beds.ac.uk Variable neighbourhood search (VNS) is one of the most recentmetaheuristics used for solving combinatorial optimization problemsin which a systematic change of neighbourhood with a local searchis carried out. However, as happens with other metaheuristics,it takes a long time to reach some useful solutions while solvingsome sort of hard combinatorial problems such as job shop scheduling(JSS). Parallelization is one of the most considerable policiesto overcome this matter. In this paper, firstly, a number ofVNS algorithms are examined for JSS problems and then four differentparallelization policies are taken into account to determineefficient parallelization for VNS algorithms. The experimentationreveals the performance of various VNS algorithms and the efficiencyof policies to follow in parallelization. In the end, the unilateral-ringtopology, a noncentral parallelization method, is found as themost efficient policy.     

Synthesis,Characterization and Employed Doxycycline Capped Gold Nanoparticles on TRP Channel Expressions in SKBR3 Breast Cancer Cells and Antimicrobial Activity

Doxycycline capped gold nanoparticles (doxy-Au(0) NPs) were prepared in an aqueous medium. Particle size and shape were determined by Transmission electron microscopy which showed the monodispersed morphology. The Fourier transform infrared spectra were represented the interaction of doxycycline with surface of doxy-Au(0) NPs. X-ray powder diffraction study gave crystalline nature of the doxy-Au(0) NPs. These doxy-Au(0) NPs have an impact on the expression levels of TRP channel genes in the breast cancer line (SKBR3) and the breast epithelial cell line (CRL-4010). Additionally, the antimicrobial activities have been evaluated to be used for multiple applications. Our results showed that the expression levels of TRP genes can be changed following the treatment of AuNPs (50 and 100 µg/mL). Furthermore, the antimicrobial activies have achieved some significant results. Finally, it has been concluded that doxy-Au(0) NPs are novel and can be used as alternative nanomedicine and extendable for control of other reducible contaminants as well.

     

Cell and protein compatibility of parylene-C surfaces

Parylene-C, which is traditionally used to coat implantable devices, has emerged as a promising material to generate miniaturized devices due to its unique mechanical properties and inertness. In this paper we compared the surface properties and cell and protein compatibility of parylene-C relative to other commonly used BioMEMS materials. We evaluated the surface hydrophobicity and roughness of parylene-C and compared these results to those of tissue culture-treated polystyrene, poly(dimethylsiloxane) (PDMS), and glass. We also treated parylene-C and PDMS with air plasma, and coated the surfaces with fibronectin to demonstrate that biochemical treatments modify the surface properties of parylene-C. Although plasma treatment caused both parylene-C and PDMS to become hydrophilic, only parylene-C substrates retained their hydrophilic properties over time. Furthermore, parylene-C substrates display a higher degree of nanoscale surface roughness (>20 nm) than the other substrates. We also examined the level of BSA and IgG protein adsorption on various surfaces and found that surface plasma treatment decreased the degree of protein adsorption on both PDMS and parylene-C substrates. After testing the degree of cell adhesion and spreading of two mammalian cell types, NIH-3T3 fibroblasts and AML-12 hepatocytes, we found that the adhesion of both cell types to surface-treated parylene-C variants were comparable to standard tissue culture substrates, such as polystyrene. Overall, these results indicate that parylene-C, along with its surface-treated variants, could potentially be a useful material for fabricating cell-based microdevices.     

Cyanide ion promoted addition of acyl phosphonates to ethyl cyanoformate: synthesis of tertiary carbinols via tandem carbon-carbon bond formations

New cyanation/phosphonate-phosphate rearrangement/C-acylation reactions of cyanophosphate anion with cyanoformate esters are described. Phase-transfer cocatalysts facilitate cyanide-catalyzed reactions between acyl phosphonates and cyanoformates to afford protected tertiary carbinol products in good to excellent yields (74-95%). Ethyl cyanoformate is used as a cyanide source and electrophile. The scope of the reaction was investigated by using a number of benzoyl and acyl phosphonates along with ethyl cyanoformate. Representative chemoselective reduction of the product 5a afforded ethyl 3-amino-2-hydroxy-2-phenylpropanoate (13) in good yield.