In vitro selection of highly modified cyclic peptides that act as tight binding inhibitors

There is a great demand for the discovery of new therapeutic molecules that combine the high specificity and affinity of biologic drugs with the bioavailability and lower cost of small molecules. Small, natural-product-like peptides hold great promise in bridging this gap; however, access to libraries of these compounds has been a limitation. Since ribosomal peptides may be subjected to in vitro selection techniques, the generation of extremely large libraries (>10(13)) of highly modified macrocyclic peptides may provide a powerful alternative for the generation and selection of new useful bioactive molecules. Moreover, the incorporation of many non-proteinogenic amino acids into ribosomal peptides in conjunction with macrocyclization should enhance the drug-like features of these libraries. Here we show that mRNA-display, a technique that allows the in vitro selection of peptides, can be applied to the evolution of macrocyclic peptides that contain a majority of unnatural amino acids. We describe the isolation and characterization of two such unnatural cyclic peptides that bind the protease thrombin with low nanomolar affinity, and we show that the unnatural residues in these peptides are essential for the observed high-affinity binding. We demonstrate that the selected peptides are tight-binding inhibitors of thrombin, with K(i)(app) values in the low nanomolar range. The ability to evolve highly modified macrocyclic peptides in the laboratory is the first crucial step toward the facile generation of useful molecular reagents and therapeutic lead molecules that combine the advantageous features of biologics with those of small-molecule drugs.     

Determination of arsenic and antimony in seawater by voltammetric and chronopotentiometric stripping using a vibrated gold microwire electrode

The oxidation potentials of As⁰/As^III and Sb⁰/Sb^III on the gold electrode are very close to each other due to their similar chemistry. Arsenic concentration in seawater is low (10–20 nM), Sb occurring at ∼0.1 time that of As. Methods are shown here for the electroanalytical speciation of inorganic arsenic and inorganic antimony in seawater using a solid gold microwire electrode. Anodic stripping voltammetry (ASV) and chronopotentiometry (ASC) are used at pH ≤ 2 and pH 8, using a vibrating gold microwire electrode. Under vibrations, the diffusion layer size at a 5 μm diameter wire is 0.7 μm. The detection limits for the As^III and Sb^III are below 0.1 nM using 2 min and 10 min deposition times respectively. As^III and Sb^III can be determined in acidic conditions (after addition of hydrazine) or at neutral pH. In the latter case, oxidation of As⁰ to As^III was found to proceed through a transient As^III species. Adsorption of this species on the gold electrode at potentials where Sb^III diffused away is used for selective deposition of As^III. Addition of EDTA removes the interfering effect of manganese when analysing As^III. Imposition of a desorption step for Sb^III analysis is required. Total inorganic arsenic (iAs = As^V + As^III) can be determined without interference from Sb nor mono-methyl arsenious acid (MMA) at 1.6 < pH < 2 using E_dep = −1 V. Total inorganic antimony (iSb = Sb^V + Sb^III) is determined at pH 1 using E_dep = −1.8 V without interference by As.     

Rigid NON- and NSN-ligand complexes of tetravalent and trivalent uranium: comparison of U-OAr2 and U-SAr2 bonding

A rigid NSN-donor proligand, 4,5-bis(2,6-diisopropylanilino)-2,7-di-tert-butyl-9,9-dimethylthioxanthene (H(2)[TXA(2)], 1) was prepared by palladium-catalyzed coupling of 2,6-diisopropylaniline with 4,5-dibromo-2,7-di-tert-butyl-9,9-dimethylthioxanthene. Deprotonation of 1 using (n)BuLi provided Li(2)(DME)(2)[TXA(2)] (2), and subsequent reaction with UCl(4) afforded [Li(DME)(3)][(TXA(2))UCl(3)] (4). The analogous NON-donor ligated complex [(XA(2))UCl(3)K(DME)(3)] [3; XA(2) = 4,5-bis(2,6-diisopropylanilino)-2,7-di-tert-butyl-9,9-dimethylxanthene] was prepared by the reaction of K(2)(DME)(x)[XA(2)] with UCl(4). A cyclic voltammogram (CV) of 3 in THF/[NBu(4)][B(C(6)F(5))(4)] at 200 mV s(-1) showed an irreversible reduction to uranium(III) at E(pc) = -2.46 V versus FeCp(2)(0/+1), followed by a product wave at E(1/2) = -1.83 V. Complex 4 also underwent irreversible reduction to uranium(iii) [E(pc) = -2.56 V], resulting in an irreversible product peak at E(pa) = -1.83 V. One-electron reduction of complexes 3 and 4 using K(naphthalenide) under an argon atmosphere in DME yielded 6-coordinate [(XA(2))UCl(DME)] (5) and the thermally unstable 7-coordinate [(TXA(2))U(DME)Cl(2)Li(DME)(2)] (6), respectively. The U-S distances in 4 and 6 are uncommonly short, the C-S-U angles are unusually acute, and the thioxanthene backbone of the TXA(2) ligand is significantly bent. By contrast, the xanthene backbone in XA(2) complexes 3 and 5 is planar. However, κ(3)-coordination and an approximately meridional arrangement of the ancillary ligand donor atoms is maintained in all complexes. DFT and Atoms in Molecules (AIM) calculations were carried out on 3, 4, 5, 6, [(XA(2))UCl(3)](-) (3B), [(TXA(2))UCl(2)(DME)](-) (6B) and [(TXA(2))UCl(DME)] (6C) to probe the extent of covalency in U-SAr(2) bonding relative to U-OAr(2) bonding.     

Photochemical oxygen consumption, oxygen evolution and spectral changes during UVA irradiation of EMT6 spheroids.

Remarkable rates of oxygen consumption are observed via microelectrode measurements immediately upon the onset of 325 nm irradiation of multicell tumor spheroids. Consumption is irradiance dependent over the range 20-200 mW cm-2, and its magnitude is comparable to that observed previously in the same system using exogenous photosensitizers. Oscillations in the oxygen concentrations suggest that oxygen is also being evolved during irradiation. Oxygen evolution is likely the result of enzymatic dissociation of hydrogen peroxide, which is formed through UV-induced photochemistry. Irradiation of spheroids at 442 and at 514 nm produces a much more modest but detectable oxygen consumption. The dynamics of oxygen concentration changes are quite different at these wavelengths, suggesting a different photochemical mechanism. In these cases, initial oxygen depletion is followed immediately by a more gradual, monotonic increase in the oxygen concentration, consistent with irreversible photobleaching. No oscillations in the oxygen concentration are detectable. At 662 nm, no oxygen consumption was observed over the range of irradiances studied. Fluorescence spectra of cells prior to irradiation include contributions from anthranilic acid and reduced nicotinamide adenine dinucleotide (NADH). During 325 nm irradiation, anthranilic acid is rapidly and irreversibly bleached, while NADH emission undergoes only modest reduction.     

Conditions for deuterium exchange mediated by iridium complexes formed in situ

A series of iridium-based complexes formed in situ, containing pyridine, phosphines, triphenylarsine, triphenylstibine, and triphenylamine as ligands, has been screened for ability to mediate ortho-exchange of hydrogen in a series of model substrates. Improved incorporation into a number of substrate classes has been achieved. The electronic properties and number of ligands at the metal centre are instrumental in determining which catalysts are best suited to exchange in any given substrate.     

Ultrafast dynamics of single-walled carbon nanotubes dispersed in polymer films

Wavelength-resolved femtosecond transient absorption spectroscopy is used to follow the electronic dynamics of single-walled carbon nanotubes in polymers following visible photoexcitation. Electron-hole (e-h) pairs give rise to sharp features in the transient spectra that decay in amplitude and exhibit rapid spectral shifts. The decay reflects (e-h) recombination on both short (1.3 ps) and long (35 ps) time scales. Transient spectra also exhibit a broad photobleach at early times that arises from the cooling of a hot electron gas created via excitation at the red edge of a pi-plasmon band.     

Degradation of polymer mixtures. IX. Blends of polystyrene with polybutadiene

The degradation of cis-1,4-polybutadiene, polystyrene, and blends of PB and PS has been studied by thermogravimetry, thermal volatilization analysis, and differential scanning calorimetry. Volatile products have been investigated and separated by subambient TVA and characterized spectroscopically. In the degradation of the blends, there is no change in the nature of the volatile products of degradation, but the rate of degradation of the PS component is markedly reduced. The PB component is the first to break down, and during the initial period of degradation of the PB, the PS degradation is apparently inhibited. It is suggested that some of the volatile products of decomposition of PB, most notably 4-vinylcyclohexene, may diffuse into the PS phase in the blend and act as radical inhibitors.     

Degradation studies of some polyesters and polycarbonates—2. Polylactide: Degradation under isothermal conditions,thermal degradation mechanism and photolysis of the polymer

The thermal degradation of polylactide has been studied at several temperatures in the range 230–440°C and the variation of product distribution with temperature has been examined. From experiments at 240–270°C, an energy of activation of 28·5 kcal mol^?1 (119 kJ mol^?1) has been calculated. Mass spectra have been obtained for polylactide and for the cold ring fraction of degradation products in TV A experiments. Both lactide and polylactide have also been heated under closed system conditions and the products have been identified.A mechanism is presented for the thermal degradation, based upon a hydroxyl end-initiated ester interchange process giving cyclic oligomers, lactide, acetaldehyde and carbon monoxide, together with a series of reactions at somewhat higher temperatures dependent upon chain homolysis, giving the same products and also carbon dioxide and methylketene.The photolysis of polylactide at 30°C, using the medium pressure mercury lamp, has been briefly examined.     

Degradation of polymer mixtures. VII. Blends of poly(vinyl acetate) with polystyrene

The degradation of films containing both PVA and PS has been investigated for comparison with the behavior already reported for PVC/PS blends. The presence of PS had little, if any, effect on the behavior of PVA, but PVA had an effect similar to that of PVC on the degradation of PS. Styrene production was retarded in the blend, compared to PS alone, and an increase in the rate of chain scission was observed for a high molecular weight sample. The molecular weight effect, however, was much smaller than in corresponding experiments with PVC/PS blends. Interference with intermolecular transfer in PS is again advanced as the probable explanation of the stabilization of PS.     

Thermal analysis of blends of low density polyethylene, poly(ethyl acrylate) and ethylene ethyl acrylate copolymer with polydimethylsiloxane

The thermal stability of blends of polyethylene, poly(ethyl acrylate) and ethylene ethyl acrylate (EEA) copolymer with polydimethylsiloxane has been investigated in inert atmosphere using TG-DTC and TVA. The condensable volatile degradation products from the TVA experiments were separated by subambient TVA and investigated by FT-IR spectroscopy, GC., MS and GCMS techniques. The cold ring fraction was characterised by FT-IR spectroscopy and GC. Most of the degradation products from the blends were similar to the degradation products from polydimethylsiloxane and the corresponding polyolefin when degraded alone, but the presence of some additional products indicated interactions during degradation as a result of blending. The mechanisms of formation of degradation products from the blends are discussed in detail.