Dependence of Fluorescent Ability on Efficiency of Intersystem Conversion in Psoralens

Results of theoretical research for seven psoralen molecules: psoralen, 5-methoxypsoralen, 8-methoxypsoralen, angelicin, pseudoisopsoralen, isopseudopsoralen, and allopsoralen, are presented. Schemes of photophysical processes in psoralens based on quantum chemical calculation by the INDO method are analyzed. Effects of isomerism and methoxysubstitution on the energy level diagram are demonstrated. The rate constants of intersystem and internal conversions are calculated. We obtained rather high intersystem conversion constant that influences on the fluorescent yield of psoralens.     

Onsager Machlup functionals for non trace class SPDE's

Summary An Onsager Machlup functional limit is derived for a class of SPDE's whose principal part is not trace class. Both nondegenerate and degenerate limits are obtained, and are illustrated by examples. The proof uses FKG type inequalities.The work of this author was partially supported by the Bernstein Fund for the promotion of research at the TechnionThe work of this author was partially supported by the Center for Intelligent Control Systems at MIT under US Army research office grant DAAL03-86-K0171     

Simple estimation of ground-state energy of antiferromagnets

A simple model describing the admixture of an isolated singlet coupled pair of spins to the fully ordered Néel state of a two-lattice $\text{S =}\text{1}\text{2}$ antiferromagnet is utilized in order to obtain an estimation (from below) of the ground-state energy.     

Are there atomic orbitals in a molecule?

Effective atomic orbitals (AOs) have been calculated by the method of the "fuzzy atoms" analysis by using the numerical molecular orbitals (MOs) obtained from plane-wave DFT calculation, i.e., without introducing any atom-centered functions. The results show that in the case of nonhypervalent atoms there are as many effective AOs with non-negligible occupation numbers, as many orbitals are in the classical minimal basis set of the given atom. This means that, for nonhypervalent systems, it is possible to present the MOs as sums of effective atomic orbitals that resemble very much the atomic minimal basis orbitals of the individual atoms (or their hybrids). For hypervalent atoms some additional orbitals basically of d-type are also of some importance; they are necessary to describe the back-donation to these positive atoms. It appears that the d-type orbitals play a similar role also for strongly positive carbon atoms. The method employed here is also useful to decide whether the use of polarization functions of a given type is a matter of conceptual importance or has only a numerical effect.     

Reactions of atomic metal anions in the gas phase: competition between electron transfer, proton abstraction and bond activation

Bare metal anions K(-), Rb(-), Cs(-), Fe(-), Co(-), Ni(-), Cu(-), and Ag(-), generated by electrospray ionization of the corresponding oxalate or tricarballylate solutions, were allowed to react with methyl and ethyl chloride, methyl bromide, nitromethane, and acetonitrile in the collision hexapole of a triple-quadrupole mass spectrometer. Observed reactions include (a) the formation of halide, nitride, and cyanide anions, which was shown to be likely due to the insertion of the metal into the C-X, C-N, and C-C bonds, (b) transfer of H(+) from the organic molecule, which is demonstrated to most likely be due to the simple transfer of a proton to form neutral metal hydride, and (c) in the case of nitromethane, direct electron transfer to form the nitromethane radical anion. Interestingly, Co(-) was the only metal anion to transfer an electron to acetonitrile. Differences in the reactions are related to the differences in electron affinity of the metals and the Δ(acid)H° of the metals and organic substrates. Density functional theory calculations at the B3-LYP/6-311++G(3df,2p)//B3-LYP/6-31+G(d) level of theory shed light on the relative energetics of these processes and the mechanisms by which they take place.     

Plug and play with RNA

Retooling RNA: RNA aptamers are high-affinity ligands that can be assembled with other structures to yield multivalent molecules. These properties have been addressed in two recent studies: One describes a GFP-like RNA reporter used to study the dynamics of endogenous RNA; the other study reports on an aptamer-templated assembly of multi-enzyme complexes in bacteria for the controlled production of secondary molecules (see picture).     

Concentration dependent tautomerism in green [Cu(HL¹)(L²)] and brown [Cu(L¹)(HL²)] with H₂L¹ = (E)-N'-(2-hydroxy-3-methoxybenzylidene)benzoylhydrazone and HL² = pyridine-4-carboxylic (isonicotinic) acid

The in situ formed hydrazone Schiff base ligand (E)-N'-(2-hydroxy-3-methoxybenzylidene)benzoylhydrazone (H?L1) reacts with copper(II) acetate in ethanol in the presence of pyridine-4-carboxylic acid (isonicotinic acid, HL2) to green-[Cu(HL1)(L2)]·H?O·C?H?OH (1) and brown-[Cu(L1)(HL2)] (2) complexes which crystallize as concomitant tautomers where either the mono-anion (HL1)? or di-anion (L1)2? of the Schiff base and simultaneously the pyridine-carboxylate (L2)? or the acid (HL2) (both through the pyridine nitrogen atom) function as ligands. The square-planar molecular copper(II) complexes differ in only a localized proton position either on the amide nitrogen of the hydrazone Schiff base in 1 or on the carboxyl group of the isonicotin ligand in 2. The proportion of the tautomeric forms in the crystalline solid-state can be controlled over a wide range from 1:2 = 95?:?5 to ～2?:?98 by increasing the solution concentration. UV/Vis spectral studies show both tautomers to be kinetically stable (inert), that is, with no apparent tautomerization, in acetonitrile solution. The UB3LYP/6-31+G* level optimized structures of the two complexes are in close agreement with experimental findings. The solid-state structures feature 1D hydrogen-bonded chain from charge-assisted O((-))H-N and O-H((-))N hydrogen bonding in 1 and 2, respectively. In 1 pyridine-4-carboxylate also assumes a metal-bridging action by coordinating a weakly bound carboxylate group as a fifth ligand to a Cu axial site. Neighboring chains in 1 and 2 are connected by strong π-stacking interactions involving also the five- and six-membered, presumably metalloaromatic Cu-chelate rings.     

Discovery of α7-nicotinic receptor ligands by virtual screening of the chemical universe database GDB-13

The chemical universe database GDB-13 enumerates 977 million organic molecules up to 13 atoms of C, N, O, Cl, and S that are virtually possible following simple rules for chemical stability and synthetic feasibility. Analogs of nicotine were identified in GDB-13 using the city-block distance in MQN-space (CBD(MQN)) as a similarity measure, combined with a restriction eliminating problematic structural elements. The search was carried out with a Web browser available at www.gdb.unibe.ch . This virtual screening procedure selected 31?504 analogs of nicotine from GDB-13, from which 48 were known nicotinic ligands reported in Chembl. An additional 60 virtual screening hits were purchased and tested for modulation of the acetylcholine signal at the human α7 nAChR expressed in Xenopus oocytes, which led to the identification of three previously unknown inhibitors. These experiments demonstrate for the first time the use of GDB-13 for ligand discovery.     

Impact of Water Consumption and Saturation-Dependent Corrosion Rate on Hydrogen Generation and Migration from an Intermediate-Level Radioactive Waste Repository

The corrosion of metals contained in intermediate-level long-lived waste (ILW) under reduced chemical condition will lead to the production of hydrogen gas during the post-closure phase of a deep geological repository for radioactive waste. According to previous investigations by Talandier et al. (Proceedings of TOUGH symposium 2006, Berkeley, 2006), the period of concern covers several 1,000 years after closure of a repository in a clay host rock (Callovo-Oxfordian). The limited hydrogen transport efficiency of the host rock will lead to significant saturation of the concrete waste canister pore space and voids with a gas phase and pressure build-up within the emplacement drifts. On the other hand, the water availability is limited as a result of (i) the low permeability of the clay host rock and (ii) the desaturation of the rock mass close to the drift wall due to the ventilation of the drifts during the operational phase of the repository. In former numerical simulations it was assumed that under the reducing chemical conditions prevailing in the repository, the corrosion rate would be a function of the available metal surface and the temperature only. In this paper, simulation results based on new phenomenological functions are presented, which were implemented in TOUGH2. These allow taking into account (i) a water saturation dependency of the hydrogen generation rate, (ii) the water consumption due to the corrosion process, and (iii) the total metal mass available for corrosion. The paper presents results of 1D radial and 2D vertical simulations of a typical cross-section of a waste emplacement drift and the surrounding rock mass. The interactions between water availability from the low permeable clay, the dependency of the hydrogen generation rates from the water saturation of the waste package and the hydrogen migration in the host rock are demonstrated.