Quasilinear parabolic equations with nonlinear flux boundary conditions and semigroups

((without abstract)). Received January 18, 1997 - Revised version received October 20, 1997     

On the actual EPR detection of thioacyl radicals

The direct EPR detection of thioacyl radicals has been reported only once, while thioacyl nitroxides remain an elusive species. We failed to detect the thioacyl radicals from two thioaldehydes and from phosphoryldithioformates but have obtained EPR evidence that thioacyl radicals react with 2-methyl-2-nitrosopropane to give thiocarbonyloxyaminyls rather than thioacyl nitroxides. The results of DFT calculations support this unexpected reactivity of thioacyls, while making questionable their previous EPR identification.     

Phosphate esters as "tunable" reagents in organic synthesis

The essential role phosphates have in biochemistry has no parallel in man-made chemistry, where the poor reactivity of these esters towards nucleophilic substitution makes more reactive substrates such as halides and sulfonates preferred. Nevertheless, phosphates are acquiring an increasing role in organic synthesis as long as new activation modes become available. These include metal catalysis and photochemistry (the latter effective with benzyl and aryl derivatives) that may turn the present limitation into a promising opportunity by devising convenient tunable reactions.     

Asymmetric biomimetic oxidations of phenols: the mechanism of the diastereo- and enantioselective synthesis of thomasidioic acid

Enantiopure chiral amidic derivatives of sinapic acid were oxidised with hydrogen peroxide using horseradish peroxidase (HRP) as the catalyst to give the aryltetraline dilignol thomasidioic acid. Trans-diastereoselectivity and enantioselectivity in the formation of thomasidioic acid was observed. Computational methods show that the enantioselectivity is controlled by the beta-beta oxidative coupling step, while the diastereoselectivity is controlled by the stability of the reactive conformation of the intermediate quinomethide.     

CuII binding sites located at His-96 and His-111 of the human prion protein: thermodynamic and spectroscopic studies on model peptides

The prion protein (PrP) is a Cu(2+)-binding cell-surface glycoprotein. Using PrP peptide fragments, by means of potentiometric, spectroscopic and thermodynamic techniques, we have shown that Cu(2+) ions bind to the region comprising His-96, His-111 and the octarepeat domain within residues 60-91. Cu(2+) may bind in different modes, which strongly depend both on His position within the peptide sequence and on the adjacent residues. We have used a series of protected oligopeptides having His at the C- or the N-terminus, inducing different binding modes to amide nitrogens around the His residue, either towards the N- or C-terminus. His imidazole acts as an anchoring site for Cu(2+) and then binding to ionized amide nitrogens follows. When it is directed towards the C-terminus the formation of a less stable seven-membered chelate ring with a {N(im), N(-)} binding mode occurs. When coordination goes towards the N-terminus the thermodynamically more stable six-membered chelate ring is formed. NMR data suggest that both the coordination modes are possible for the model peptides; however, the thermodynamic measurements show that they only slightly differ in energy and the influence of the adjacent amino acid residues can address the coordination toward the C- or the N-terminus.     

Thioflavin T hydroxylation at basic pH and its effect on amyloid fibril detection

The fluorescent dye thioflavin T (ThT) is commonly used for in situ amyloid fibril detection. In this work, we focused on the spectroscopic properties and chemical stability of ThT in aqueous solution as a function of pH, temperature, and dye concentration. A reversible hydroxylation process occurs in alkaline solutions, which was characterized using a combination of UV-vis absorption spectroscopy, proton NMR, and density functional theory (DFT). On the basis of these studies, we propose a chemical structure for the hydroxylated form. Finally, by means of fluorescence spectroscopy, ThT hydroxylation effects on in situ amyloid detection have been investigated, providing new insights on the efficiency of the ThT assay for quantitative fibril evaluation at basic pH.     

A comparison of results obtained using liquid injection and headspace solid-phase microextraction for crude oil analysis by GC with mass spectrometer detection

Gas chromatographic (GC) analysis in solution and head space solid-phase microextraction (SPME)-GC analysis of a sample of crude oil gave different results. The SPME technique allowed the identification of a larger number of components than by using usual GC-mass spectrometry (MS). The method failed within the range of C14-C25 where GC-MS in solution allowed to obtain more representative results; on the contrary, SPME allowed to obtain data on the presence of volatile compounds that can not be identified in GC-MS analysis in solution. Furthermore, in the range C8-C12, SPME allowed to identify approximately 30 compounds not shown in the GC-MS analysis in solution. SPME analysis showed the presence of some alkenes not identified in GC-MS analysis in solution. SPME-GC-MS can be used in the analysis of crude oil in contaminated soil.     

A kinetic study of guest displacement reactions on a host-guest complex with a photoswitchable calixarene

The displacement processes of several guests, incorporated in a calixarene host system, were investigated in the gas phase by electrospray ionization-Fourier transform-ion cyclotron resonance (ESI-FT-ICR) mass spectrometry. The complexes resulting from a resorcin[4]arene host with ammonia and sec-butylamine guests were isolated in an ICR-cell, separately using both states of the photoswitch as well as two reference systems for the open and closed forms of the photoswitchable host. The isolated complexes were forced to exchange the guest by using methylamine, ethylamine and sec-butylamine, resulting in different reaction rates for all the measured systems. Especially, the reaction rates of both states of the photoswitch are dependent on the provided guest. Potential side effects like proton exchanges were examined by an H/D-exchange experiment. The results were investigated and supported by quantum chemical calculations (DFT).     

Photodynamics of azobenzene in a hindering environment

We have run trajectory surface hopping simulations of the trans → cis photoisomerization of azobenzene, subject to a pulling force. The model mimics two situations: a trans-azobenzene derivative with bulky substituents that may not be easily displaced, and a recent experiment by Gaub’s group [T. Hugel, N.B. Holland, A. Cattani, L. Moroder, M. Seitz, H.E. Gaub, Science 296 (2002) 1103; N.B. Holland, T. Hugel, G. Neuert, A. Cattani-Scholz, C. Renner, D. Oesterhelt, L. Moroder, M. Seitz, H.E. Gaub, Macromolecules 36 (2003) 2015; G. Neuert, T. Hugel, R.R. Netz, H.E. Gaub, Macromolecules 39 (2005) 789], in which a polymer with azobenzene units was stretched in an atomic force microscope. In both cases, the shortening of the azobenzene moiety in going from the trans to the cis form is opposed by a pulling force. Our simulations show that the trans → cis photoconversion is only partially suppressed by considerably large forces (≈500 pN or more). However, the cis isomer reverts to trans in the ground state, with the help of the pulling force and using the vibrational energy that is available in the first 1–2 ps. The lowering of the quantum yields is therefore the combined result of hindering of the excited state process and of the hot ground state back reaction.