Enriched copper isotope tracer for dietary copper incorporation into hair using neutron activation analysis in conjunction with direct-current argon plasma spectrometry

A method is described for labeling and measuring the incorporation of dietary copper into hair using the enriched (99.61 atomic-%) ⁶⁵Cu isotope. Natural isotope abundant copper exists as ⁶⁵Cu (30.86 atomic-%) and ⁶³Cu (69.17 atomic-%), but enriched (99.61 atomic-%) ⁶⁵Cu isotope may be obtained commercially and administered to change deliberately the natural isotope abundance of copper to “label” the copper source. Natural isotope abundant copper and the enriched (99.61 atomic-%) ⁶⁵Cu isotope were mixed into rat feed and administered daily by gavage. The isotope concentration was determined by neutron activation analysis (NAA). The copper concentration was determined by direct-current argon plasma (DCP) spectrometry.The measured copper isotope ratios (⁶⁵Cu/Cu_tot)_for the natural isotope abundant copper in National Bureau of Standards Standard Reference Materials (NBS SRM) 1571 Orchard Leaves and 1577a Bovine Liver were 0.3201 ± 0.0039 and 0.3187 ± 0.0089, respectively. Measured copper isotope ratios in rat hair were 0.3100 ± 0.0606, 0.4580 ± 0.2495 and 0.2712 ± 0.0645 from rats given a standard feed that contained natural isotope abundant copper, a daily supplement of natural isotope abundant copper sulfate mixed into the standard feed and a daily supplement of copper sulfate administered by gavage, respectively. The copper isotope ratio increased to 0.5251 ± 0.2860 and 0.7235 ± 0.0704 in hair from rats given enriched ⁶⁵Cu in their feed and by gavage, respectively. The statistically significant increase in the ⁶⁵Cu isotope when administered by gavage demonstrates strates successful labeling of dietary copper in the hair.     

Respirometric analysis of the biodegradation of organic contaminants in soil and water

Client-funded bench-scale investigations concerning the likelihood of successfully applying biological remediation to hazardous wastes must be cost-effective, and they usually need only determine if biodegradation is likely to occur on site. To assess the potential for stimulating biodegradation, biochemical oxygen demand (BOD) was used to continuously monitor bacterial respiration during growth on mixed organic wastes from contaminated water and soil. Continuously collected oxygen-consumption data provided information on the overall metabolic activity of the resident bacterial population and permitted direct observation of the cessation of microbial respiratory activity and, thus, the termination of aerobic degradation. The correlation of biological oxygen utilization with biodegradation was confirmed using independent analytical methods. Continuous, long-term BOD analysis was applied to bench-scale studies to assess the biodegradation of mixed organic wastes from contaminated sites and industrial waste effluents. This information was used to make an initial determination regarding the need to further explore bioremediation as a potential remedial-action technology using on-site, pilot-scale testing.     

Poly(alkyl α-chloroacrylates). V. Preparation and properties of methyl,ethyl, and isopropyl polymers of varied tacticity

Polymers of different tacticities, from highly isotactic to highly syndiotactic, were prepared from methyl, ethyl, and isopropyl α-chloroacrylates. These polymers were characterized for tacticity by infrared spectroscopy and 100 and 300 MHz nuclear magnetic resonance (NMR) and for thermal properties by differential scanning calorimetry (DSC). After corrections were made for molecular weight effects, the observed glass temperature-tacticity results were analyzed, and it was determined that the maximum differences in glass temperatures of the purely isotactic compared to the purely syndiotactic polymers should be 92°C for the methyl ester, 86°C for the ethyl ester, and 68°C for the isopropyl ester polymers. The highly isotactic polymers of all three esters were crystalline. Possible polymerization reaction mechanisms are discussed on the basis of the triad and tetrad tacticity values observed and the calculated propagation statistics.     

Effects of the standardization of quantitative fluorometry on the automated evaluation of platelet antibodies

An automated fluorescence invertoscope featuring a computer-controlled scanning stage with plate inserts for multiple samples, a photomultiplier tube and software controlling every function of the microscope were used to collect the fluorescence data after analog-to-digital conversion. Principal differences between this method and qualitative platelet tests include the standardization of all test reagents and the quantitative evaluation of possible autofluorescence. The automated data acquisition permitted the separate evaluation of the fluorescence intensities of all materials to ensure low background fluorescence and optimal fluorochrome concentrations. EDTA-anticoagulated platelets of 100 donors were incubated with serum, subsequently with fluorescein- or rhodamine-treated IgG, washed, counted in PBS-glycerol, and mounted on thin glass plates. Each plate contained 5000 cells per test and negative and positive controls.     

Development and validation of a LC-MS/MS assay for quantitation of plasma citrulline for application to animal models of the acute radiation syndrome across multiple species

The potential risk of a radiological catastrophe highlights the need for identifying and validating potential biomarkers that accurately predict radiation-induced organ damage. A key target organ that is acutely sensitive to the effects of irradiation is the gastrointestinal (GI) tract, referred to as the GI acute radiation syndrome (GI-ARS). Recently, citrulline has been identified as a potential circulating biomarker for radiation-induced GI damage. Prior to biologically validating citrulline as a biomarker for radiation-induced GI injury, there is the important task of developing and validating a quantitation assay for citrulline detection within the radiation animal models used for biomarker validation. Herein, we describe the analytical development and validation of citrulline detection using a liquid chromatography tandem mass spectrometry assay that incorporates stable-label isotope internal standards. Analytical validation for specificity, linearity, lower limit of quantitation, accuracy, intra- and interday precision, extraction recovery, matrix effects, and stability was performed under sample collection and storage conditions according to the Guidance for Industry, Bioanalytical Methods Validation issued by the US Food and Drug Administration. In addition, the method was biologically validated using plasma from well-characterized mouse, minipig, and nonhuman primate GI-ARS models. The results demonstrated that circulating citrulline can be confidently quantified from plasma. Additionally, circulating citrulline displayed a time-dependent response for radiological doses covering GI-ARS across multiple species.     

A combinatorial approach to the discovery of biocidal six-residue cyclic D,L-alpha-peptides against the bacteria methicillin-resistant Staphylococcus aureus (MRSA) and E. coli and the biofouling algae Ulva linza and Navicula perminuta

A combinatorial approach has been used to rapidly identify cyclic d,l-alpha-peptide hexamer sequences that exert biocidal activity towards both methicillin-resistant Staphylococcus aureus (MRSA) and E. coli bacteria, as well as the marine algae Ulva linza and Navicula perminuta. Evaluation of the effects against marine algae was facilitated by the development of a reliable, automated assay for toxicity, which should be of general utility for biofouling investigations. While the selective toxicity of cyclic D,L-alpha-peptides towards bacteria has been proven to be highly sensitive to minor changes in amino acid composition, this study demonstrates that this phenomenon extends to eukaryotic species as well, despite their significant structural differences. In performing toxicity assays on both prokaryotic and eukaryotic organisms in parallel, we have discovered examples of six-residue cyclic D,L-alpha-peptide sequences with either broad-spectrum or highly selective biocidal activities. Sequence [KWFFFH] (underlined amino acid abbreviations represent D-amino acid residues) was found to display 100-fold selectivity towards U. linza, demonstrating that the approach described herein may help lead to the development of new biofouling tools which are not generally toxic to all organisms, but rather specifically target microbial agents of interest.     

Engineering of biocatalysts - from evolution to creation

Enzymes are increasingly being used in an industrial setting as a cheap and environmentally-friendly alternative to chemical catalysts. In order to produce the ideal biocatalyst, natural enzymes often require optimization to increase their catalytic efficiencies and specificities under a particular range of reaction conditions. A number of enzyme engineering strategies are currently employed to modify biocatalysts, improving their suitability for large-scale industrial applications. These include various directed evolution techniques, semi-rational design techniques, and more recently, the de novo design of novel enzymes. Advances in mutant library design, high-throughput selection processes, and the introduction of powerful computer algorithms have all contributed to the current exponential growth of the field of enzyme engineering. This review article aims to present some of the currently employed strategies for enzyme engineering and attempts to highlight the most recent advances in methodology.