Radical Stability Directs Electron Capture and Transfer Dissociation of β‐Amino Acids in Peptides

We report on the characteristics of the radical‐ion‐driven dissociation of a diverse array of β‐amino acids incorporated into α‐peptides, as probed by tandem electron‐capture and electron‐transfer dissociation (ECD/ETD) mass spectrometry. The reported results demonstrate a stronger ECD/ETD dependence on the nature of the amino acid side chain for β‐amino acids than for their α‐form counterparts. In particular, only aromatic (e.g., β‐Phe), and to a substantially lower extent, carbonyl‐containing (e.g., β‐Glu and β‐Gln) amino acid side chains, lead to N? C_β bond cleavage in the corresponding β‐amino acids. We conclude that radical stabilization must be provided by the side chain to enable the radical‐driven fragmentation from the nearby backbone carbonyl carbon to proceed. In contrast with the cleavage of backbones derived from α‐amino acids, ECD of peptides composed mainly of β‐amino acids reveals a shift in cleavage priority from the N? C_β to the C_α? C bond. The incorporation of CH₂ groups into the peptide backbone may thus drastically influence the backbone charge solvation preference. The characteristics of radical‐driven β‐amino acid dissociation described herein are of particular importance to methods development, applications in peptide sequencing, and peptide and protein modification (e.g., deamidation and isomerization) analysis in life science research.     

Combination of nitroxide‐mediated polymerization and SET‐LRP for the synthesis of high molar mass branched and star‐branched poly(n‐butyl acrylate) characterized by size exclusion chromatography and rheology

Branched and star‐branched polymers were successfully synthesized by the combination of two successive controlled radical polymerization methods. A series of linear and star poly(n‐butyl acrylate)‐co‐poly(2‐(2‐bromoisobutyryloxy) ethyl acrylate) statistical copolymers, P(nBA‐co‐BIEA)_x, were first synthesized by nitroxide‐mediated polymerization (NMP at T > 100 °C). The subsequent polymerization of n‐butyl acrylate by single electron transfer‐living radical polymerization (SET‐LRP at T = 25 °C), initiated from the brominated sites of the P(nBA‐co‐BIEA)_x copolymer, produced branched or star‐branched poly(n‐butyl acrylate) (PnBA). Both types of polymerizations (NMP and SET‐LRP) exhibited features of a controlled polymerization with linear evolutions of logarithmic conversion versus time and number‐average molar masses versus conversion for final M_n superior to 80,000 g mol^?1. The branched and star‐branched architectures with high molar mass and low number of branches were fully characterized by size exclusion chromatography. The Mark–Houwink Sakurada relationship and the analysis of the contraction factor (g′ = ([η]_branched/[η]_linear)_M) confirmed the elaboration of complex PnBA. The zero‐shear viscosities of the linear, star‐shaped, branched, and star‐branched polymers were compared. The modeling of the rheological properties confirmed the synthesis of the branched architectures. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Structure-activity relationships for the fluorescence of ochratoxin A: insight for detection of ochratoxin A metabolites

Ochratoxin A (OTA) is a mycotoxin produced by Aspergillus and Penicillium that is widely found as a contaminant of food products. The toxin is a renal carcinogen in male rats, the cause of mycotoxicoses in pigs and has been associated with chronic human kidney diseases. Bioactivation has been implicated in OTA-mediated toxicity, although inconsistent results have been reported, due, in part, to the difficulty in detecting OTA metabolites in vivo. Liquid chromatography (LC) coupled with fluorescence detection (FLD) is the most widely used analytical detection method for OTA. Under acidic conditions the toxin generates blue fluorescence (465 nm) that is due to an excited state intramolecular proton transfer (ESIPT) process that generates an emissive keto tautomer. Disruption of this ESIPT process quenches fluorescence intensity and causes a blue shift in emission maxima. The aim of the present study was to determine the impact of the C5-chlorine atom, the lactone moiety and the amide bond on OTA fluorescence and derive optical parameters for OTA metabolites that have been detected in vitro. Our results highlight the limitations of LC/FLD for OTA metabolites that do not undergo ESIPT. For emissive derivatives, our absorption and emission data improves the sensitivity of LC/FLD (3-4-fold increase in the limit of detection (LOD)) for OTA analogues bearing a C5-OH group, such as the hydroquinone (OTHQ) metabolite and the glutathione conjugate of OTA (OTA-GSH). This increased sensitivity may facilitate the detection of OTA metabolites bearing a C5-OH group in biological fluids and enhance our understanding of OTA-mediated toxicity.     

Recognition of enantiomers with chiral molecular tweezers derived from (+)- or (−)-usnic acid

The synthesis of four stereoisomers of a chiral molecular tweezer using trans-1,2-diaminocyclohexane as spacer and two molecules of usnic acid as pincers is reported. The behavior of these chiral tweezers as chiral complexing agents was evaluated in NMR with various chiral esters containing an electron-poor aromatic ring to allow non-covalent aromatic–aromatic interactions.     

4J(H?H)-Kopplungen und Magnetisch Nichtäquivalente Methylenprotonen in Einigen 1,3-oxathiolan-5-on-Derivaten

⁴J(H? H) couplings and magnetic nonequivalent methylenic protons in some 1,3-oxathiolan-5-one derivatives were studied in several solvents.     

Une interprétation du théorème de colonnetti

Summary Considering an elastic-plastic continuum, the plastic deformations of which are given, it is prooved in a general way thatColonnetti's function (4), where ( _x , ..., _xy , ...) is the stress tensor, ( ) the plastic-strain tensor and the elastic potential energy, differs only by a constant value from the fictitious strain energy evaluated from the total strain as if it were purely elastic. Consequently, both functions are simultaneously minima andColonnetti's theorem can be rephrased in terms of fictitious (elastic) strain energy.     

Atom Transfer Radical Polymerization of Styrene and Methyl Methacrylate from Mesoporous Ordered Silica Particles

Summary: Mesoporous silica was used as substrate for the grafting of alkyl halides initiators. The control over the surface‐initiated polymerization of styrene and MMA, in terms of molar mass and molar mass distribution, was successfully achieved using an ATRP mechanism. The occurrence of the polymerization inside the mesopores was confirmed by thermogravimetric analysis.

Transmission electron microscopy and schematic representation of mesoporous silica functionalized by the anchored iniator (left) and the grafted polymer (right).     

A stabilized column generation scheme for the traveling salesman subtour problem

Given an undirected graph with edge costs and both revenues and weights on the vertices, the traveling salesman subtour problem is to find a subtour that includes a depot vertex, satisfies a knapsack constraint on the vertex weights, and that minimizes edge costs minus vertex revenues along the subtour.We propose a decomposition scheme for this problem. It is inspired by the classic side-constrained 1-tree formulation of the traveling salesman problem, and uses stabilized column generation for the solution of the linear programming relaxation. Further, this decomposition procedure is combined with the addition of variable upper bound (VUB) constraints, which improves the linear programming bound. Furthermore, we present a heuristic procedure for finding feasible subtours from solutions to the column generation problems. An extensive experimental analysis of the behavior of the computational scheme is presented.