Changes in electronic structure upon Li insertion reaction of monoclinic Li3Fe2(PO4)3

The electrochemical lithium insertion reaction of monoclinic Li(3)Fe(2)(PO(4))(3) as cathode materials of lithium-ion batteries was investigated from the viewpoint of the electronic structure around Fe and the polyanion unit (PO(4)). Fe K-edge and L(III,II)-edge XAS measurements revealed that Fe(3+) was reduced to Fe(2+) upon Li insertion. In addition, O K-edge and P K-edge XAS also showed spectral changes upon Li insertion, which corresponded to changes in the electronic structure of the PO(4) polyanion unit. The ab initio density functional calculation was performed within the GGA and LDA+U methods. The LDA+U method reproduced well the cell potential upon lithium intercalation into Li(3)Fe(2)(PO(4))(3), whereas the GGA method underestimated the intercalation. The calculated electronic structure of Li(3)Fe(2)(PO(4))(3) described strong P 3p-O 2p covalent bonding, while weak hybridization was indicated in Fe 3d-O 2p. Moreover, the difference in electronic density between Li(3)Fe(2)(PO(4))(3) and the lithiated model indicated that the polarization effect between inserted Li and oxygen induced the changes in the electronic structure around the polyanion unit.     

Total synthesis of (+)-mycalamide A

A convergent total synthesis of (+)-mycalamide A is described. A Yb(OTf)3-TMSCl catalytic system is used to synthesize a trioxadecalin ring system, which contains the right segment of mycalamide A. In addition, a tetrahydropyran ring, which is the left segment, is constructed with use of a novel one-pot delta-lactonization protocol. Both segments are prepared from a common starting material, d-mannitol. These segments are then coupled and the functional groups are transformed to synthesize (+)-mycalamide A.     

Electrochemical studies of (−)-epigallocatechin gallate and its interaction with DNA

In this paper, an electrochemical investigation of (−)-epigallocatechin gallate (EGCG) and its interaction with DNA is presented. Via an electrochemical approach assisted by ultraviolet–visible (UV–Vis) spectroscopy, we propose that EGCG can intercalate into DNA strands forming a nonelectroactive complex, which results in the decrease of the anodic peak current of EGCG. Meanwhile, an electrochemical study with the DNA–Cu(II)–EGCG system shows that damage to DNA can be recognized electrochemically via the increase in the anodic peak current resulting from the oxidation of guanine and adenine bases. The damage can also be recognized spectrophotometrically via an increase in the 260 nm absorption band. In addition, it was found that EGCG is able to discriminate dsDNA from ssDNA, making a potential electrochemical indicator for the detection of DNA hybridization events. A rapid and convenient method of detecting EGCG was also developed in this work. Figure Interaction of EGCG with DNA and damage to DNA in the presence of Cu(II) Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users.     

Control of the optical properties of quantum dots by surface coating with calix[n]arene carboxylic acids

A new method for the control of the optical properties of quantum dots (QDs) has been developed using calix[n]arene carboxylic acids (1-3) as surface coating agents for QDs. The calixarene coating of CdSe/ZnS QDs was easily performed in tetrahydrofuran at room temperature. Deprotonation of the carboxyl groups of the calixarene derivatives surrounding the QDs resulted in highly fluorescent water-soluble QDs. The emission peak of the calixarene-coated QDs shifted to longer wavelengths depending on the oligomer size of the calix[n]arene derivative used for the surface coating. Although the red shift of the emission peak decreases with the increase in the particle size of QDs, this surface coating method is useful for the preparation of multi-colored water-soluble QDs from a single-colored hydrophobic QD.     

RP–HPLC–ESI–MS characterization of novel peptide fragments related to rat parotid secretory protein in parasympathetic induced saliva

Two peptides (MW 1211.7 and 928.5 Da) were detected by RP–HPLC–ESI–MS analysis of parotid saliva secreted upon continuous parasympathetic stimulation. The peptide with the higher mass (PSPFr‐A) corresponded to the N‐terminal dodecapeptide (Fragment 1–12) of rat parotid secretory protein (PSP), while the peptide with the lower mass (PSPFr‐B) corresponded to the 4–12 fragment of the same protein. During stimulation, the PSPFr‐A secretion increased, while the PSPFr‐B secretion decreased (HPLC–ESI–MS). In the presence of cycloheximide, PSPFr‐A was not demonstrated, while the PSPFr‐B secretion decreased. In the presence of aprotinin, the PSPFr‐B secretion was almost abolished, while the PSPFr‐A secretion increased to higher levels than those observed in the absence of the inhibitor. In vitro perfusion, with artificial solution, of stimulated rat parotid glands excluded that the fragments were derived from the circulation. Neither peptide occurred in enriched granule preparations from unstimulated glands. The results suggest that at least two pathways – granular and vesicular – are responsible for the generation of the two peptides. PSPFr‐A is the first cleavage product in both pathways. PRPFr‐B is probably generated from granular PSPFr‐A only and, at the end of the granule mediated pathway, by the action of an enzyme of the serine protease class.     

N2 emission-channel change in NO reduction over stepped Pd(211) by angle-resolved desorption

A sharp change in the N₂ emission channel from N₂O(a) → N₂(g) + O(a) to N(a) + N(a) → N₂(g) has been found at around 500 K in a steady-state NO + D₂ reaction over stepped Pd(211) = [(S)3(111) × (100)] by means of angle-resolved desorption. The desorbing N₂ is highly collimated at around 30° off normal toward the step-down direction below about 500 K due to the intermediate N₂O decomposition, whereas, above 500 K, the near normally directed desorption due to the recombination of N(a) is relatively enhanced. The N₂O decomposition channel is promoted when the reaction is carried out with hydrogen (deuterium) and the channel change is accelerated by quick changes of the amounts of surface hydrogen and oxygen (or NO(a)) into the opposite directions, and enhanced nitrogen removal as ammonia on the resultant hydrogen-rich surface. In the steady-state NO + CO reaction, the N₂ emission channel gradually changes above 500 K toward recombination. A model for the off-normal N₂ emission is briefly described.     

Interfacial structure of Co porphyrins on Au(111) electrode: Interaction of porphyrin molecules with substrate

Interfacial structures of cobalt(II) porphine (CoP) and [2,3,7,8,12,13,17,18‐octaethyl‐21H,23-H-porphine]cobalt(II) (CoOEP) have been studied on Au(111) electrode using electrochemical scanning tunneling microscopy (EC-STM), in-situ X-ray diffraction, and density functional theory (DFT) calculations. The adsorption of porphyrins affects the reconstruction of Au(111) surface. The adsorption of CoP causes a lifting of the reconstruction to a complete 1 × 1 structure of Au(111). On CoOEP modified Au(111), the unit cell periodicity of the reconstructed substrate structure expands compared with the √3 × 23 structure of bare Au(111). The same expanded substrate structure was observed on Au(111) modified with OEP without the coordinated Co ion; the coordinated metal ion of the adsorbed porphyrin molecule does not affect the substrate structure. This result indicates that the interaction of conjugated π electrons of porphyrin with the substrate is stronger than that of the coordinated Co ion. In-situ X-ray diffraction and DFT calculation support non-covalent interaction of porphyrins with the Au(111) surface.     

Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency

In the replica-permutation method, an advanced version of the replica-exchange method, all combinations of replicas and parameters are considered for parameter permutation, and a list of all the combinations is prepared. Here, we report that the temperature transition probability depends on how the list is created, especially in replica permutation with solute tempering (RPST). We found that the transition probabilities decrease at large replica indices when the combinations are sequentially assigned to the state labels as in the originally proposed list. To solve this problem, we propose to modify the list by randomly assigning the combinations to the state labels. We performed molecular dynamics simulations of amyloid-β(16–22) peptides using RPST with the “randomly assigned” list (RPST-RA) and RPST with the “sequentially assigned” list (RPST-SA). The results show the decreases in the transition probabilities in RPST-SA are eliminated, and the sampling efficiency is improved in RPST-RA.     

Synthesis of C-nucleosides via coupling of ribosyl fluoride with typical aromatic heterocycles bearing a TMS group

The direct coupling reaction of D -ribosyl fluoride with typical π-excessive aromatic heterocycles such as furan, thiophene, pyrrole, benzofuran, benzothiophene, and indole and their trimethylsilyl derivatives was performed in the presence of boron trifluoride to afford the corresponding C-nucleosides in moderate to good yields.