Complex formation of CdSe/ZnS/TOPO nanocrystal vs. molecular chaperone in aqueous solution by hydrophobic interaction

Feasibilities to stabilize CdSe/ZnS/trioctylphosphineoxide (TOPO) nanocrystals (quantum dots, QDs) in aqueous solutions with prefoldin macromolecules in their bioactive states are reported. Prefoldin is a jellyfish-shaped hexameric co-chaperone of the group II chaperonins. As a protein folding intermediate is captured within its central cavity, so CdSe/ZnS/TOPO QDs would also be included within this cavity. It is also found the QDs can be much more dispersed in aqueous solutions and suspended for certain period of time by adding trace amount of t-butanol in the buffer prior to the mixing of the QDs mother solution. While biochemical procedures are evaluated with ordinary fluorescence measurements, possible complex formations are also evaluated with TIRFM single-molecule detection techniques.     

Reflection spectra of various kinds of oxide glasses and fluoride glasses in the vacuum ultraviolet region

Reflection spectra of silicate, borate, phosphate, fluorophosphate and fluoride glasses are studied in the spectral region of 2–13 eV in order to understand their dispersion behaviors in the visible region from the point of view of atomic structures.The absorption bands due to bridging oxygen ions or fluorine ions are found at 11.6 eV and 10.4–9.5 eV in silicate glasses, at 10.2 and 8.8 eV in borate glasses, at 9.5 eV in phosphate glasses, at 11.2 eV in fluorophosphate glasses and at 11 eV in fluorozirconate glasses.In silicate glasses, the bands due to nonbridging oxygen ions are found in the region 8.8-4.9 eV. They shift to lower energies with increasing ionic radius, in the order of Ca²⁺, Sr²⁺ and Ba²⁺, for the glasses containing low valency cations, while they shift to higher energies with increasing ionic radius, in the order of Ti⁴⁺, Zr⁴⁺ and Th⁴⁺ or in the order of Nb⁵⁺ and Ta⁵⁺, for the glasses containing high valency cations.In glasses containing large amounts of PbO, strong bands due to PB²⁺ ions appear in the lower energy regions of 6.3–5.6 eV and 5.2–4.7 eV.     

An Acid-Activatable Fluorescence Probe for Imaging Osteocytic Bone Resorption Activity in Deep Bone Cavities

A rationally designed pH-activatable fluorescent probe (pHocas-RIS) has been used to measure localised pH levels in osteocytic lacunae in bone tissue. Conjugation of the moderate bone-binding drug risedronate to a pH-activatable BODIPY fluorophore enables the probe to penetrate osteocytic lacunae cavities that are embedded deep within the bone matrix. After injection of pHocas-RIS, any osteocytic lacunae caused by bone-resorbing osteocytes cause the probe to fluoresce in vivo, thus allowing imaging by intravital two-photon excitation microscopy. This pH responsive probe enabled the visualization of the bone mineralizing activities of acid producing osteocytes in real time, thus allowing the study of their central role in remodeling the bone-matrix in healthy and disease states.     

DNA alkylation by pyrrole-imidazole seco-CBI conjugates with an indole linker: sequence-specific DNA alkylation with 10-base-pair recognition through heterodimer formation

The sequence-specific DNA alkylation by conjugates 4 and 5, which consist of N-methylpyrrole (Py)-N-methylimidazole (Im) polyamides and 1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benz[e]indole (seco-CBI) linked with an indole linker, was investigated in the absence or presence of partner Py-Im polyamide 6. High-resolution denaturing polyacrylamide gel electrophoresis revealed that conjugate 4 alkylates DNA at the sequences 5'-(A/T)GCCTA-3' through hairpin formation, and alkylates 5'-GGAAAGAAAA-3' through an extended binding mode. However, in the presence of partner Py-Im polyamide 6, conjugate 4 alkylates DNA at a completely different sequence, 5'-AGGTTGTCCA-3'. Alkylation of 4 in the presence of 6 was effectively inhibited by a competitor 7. Surface plasmon resonance (SPR) results indicated that conjugate 4 does not bind to 5'-AGGTTGTCCA-3', whereas 6 binds tightly to this sequence. The results suggest that alkylation proceeds through heterodimer formation, indicating that this is a general way to expand the recognition sequence for DNA alkylation by Py-Im seco-CBI conjugates.     

Fourier transform microwave spectrum of CO-dimethyl ether

Two sets of 32 rotational transitions were observed for the carbon monoxide-dimethyl ether (CO-DME) complex and two sets of 30 transitions for both (13)CO-DME and C(18)O-DME, in the frequency region from 3.5 to 25.2 GHz, with J ranging from 1<--0 up to 7<--6, by using a Fourier transform microwave spectrometer. The splittings between the two sets of the same transition varied from 2 to 15 MHz, and the two components were assigned to the two lowest states of the internal rotation of CO with respect to DME governed by a twofold potential. A preliminary analysis carried out separately for the two sets of the observed transition frequencies by using an ordinary asymmetric-rotor Hamiltonian indicated that the heavy-atom skeleton of the complex was essentially planar, as evidenced by the "pseudoinertial defects," i.e., the inertial defects, which involve the contributions of the out-of-plane hydrogens of the two methyl groups, I(cc)-I(aa)-I(bb) of -5.764(23) and -5.753(16) uA(2) for the symmetric and antisymmetric states, respectively. All of the observed transition frequencies were subsequently analyzed simultaneously, by using a phenomenological Hamiltonian which was described in a previous paper on Ar-DME and Ne-DME [Morita et al., J. Chem. Phys. 124, 094301 (2006)]. The rotational constants thus derived were analyzed to give the distance between the centers of gravity of the two component molecules, DME and CO, to be 3.682 A and the angle between the CO and the a-inertial axes to be 75.7 degrees ; the C end of the CO being closer to the DME. Most a-type transitions were observed as closely spaced triplets, which were ascribed to the internal rotation of the two methyl tops of DME. The V(3) potential barrier was obtained to be 772(2) cm(-1) from the first-order Coriolis coupling term between the internal rotation and overall rotation, which is about 82% of V(3) for the DME monomer, whereas the second-order contribution of the coupling to the B rotational constant led to V(3) of 705(3) cm(-1). By assuming a Lennard-Jones-type potential, the dissociation energy was estimated to be E(B)=1.6 kJ mol(-1), to be compared with 1.0 and 2.5 kJ mol(-1) for Ne-DME and Ar-DME, respectively.     

Novel methodology to control the adsorption structure of cationic porphyrins on the clay surface using the "size-matching rule"

Saponite-type clays that have different cation exchange capacities were successfully synthesized by hydrothermal synthesis. The structure and properties were analyzed by X-ray diffraction, X-ray fluorescence, (27)Al NMR, FT-IR, thermogravimetric and differential thermal analysis, atomic force microscopy, and cation exchange capacity measurement. The intercharge distances on the synthetic saponite (SS) surfaces were calculated to be 0.8-1.9 nm on the basis of a hexagonal array. The complex formation behavior between SS and cationic porphyrins was examined. It turns out that the average intermolecular distance between porphyrin molecules on the SS surface can be controlled, depending on the charge density of the SS. In the case of tetrakis(1-methylpyridinium-4-yl)porphyrin (H(2)TMPyP(4+)), the average intermolecular distances on the SS surface can be controlled from 2.3 to 3.0 nm on the basis of a hexagonal array. It was also found that absorption maxima of porphyrins depend on the charge density of the SS. The adsorption behavior of porphyrin on the SS surface can be rationally understood by the previously reported "size-matching rule". This methodology using host-guest interaction can realize a unique adsorption structure control of the porphyrin molecule on the SS surface, where the gap distance between guest porphyrin molecules is rather large. These findings will be highly valuable to construct photochemical reaction systems such as energy transfer in the complexes.     

Polycyclic N‐heterocyclic compounds. Part 66: Synthesis of N‐[2‐([1,2,4]oxadiazol‐5‐yl)cyclopenten‐1‐yl]formamide oximes and their evaluation as inhibitors of platelet aggregation

N‐[2‐([1,2,4]Oxadiazol‐5‐yl)cyclopenten‐1‐yl]formamide oximes were synthesized by fusion of (6,7‐dihydro‐5H‐cyclopenta[1,2‐d]pyrimidin‐4‐yl)amidines and/or their amide oximes with hydroxylamine hydrochloride through a subsequent rearrangement reaction. Assay of the products for anti‐platelet aggregation activity revealed that certain of them showed promising inhibitory effect on arachidonic acid‐induced platelet aggregation. J. Heterocyclic Chem., (2011).