Electron delocalization in cross-conjugated p-phenylenevinylidene oligomers

The synthesis, structure, and electronic properties of a series of cross-conjugated p-phenylenevinylidene oligomers with one to four double bonds are reported. The X-ray crystal structure of the compound with two double bonds reveals a nonplanar conformation with torsion angles about the C(phenylene)-C(vinylidene) and C(phenyl)-C(vinylidene) formal single bonds of 39.5(2) degrees and 30.5(2) degrees, respectively. Admixture of quinoid character in the ground state is observed. Infrared and Raman spectroscopy do not provide a clear picture of the degree of electron delocalization in the series, since the C=C stretching mode does not adequately reflect the C=C bond order and has a local nature. In contrast, electronic spectra and electrochemical data, as well as AM1 and PPP/SCF calculations, reveal that the cross-conjugated compounds basically behave as linearly pi-conjugated systems in the sense that molecular orbitals are delocalized over the entire structure and systematically change in energy. The electronic interaction between the repeating units is, however, not very strong, which has the consequence that spatial extension of the molecular orbitals does not lead to a red shift of the highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) electronic transition. This is related to the feature that the modest narrowing of the HOMO-LUMO gap with the chain length is accompanied by a relatively large reduction of electron repulsion. This finding implies that care should be taken in the use of electronic spectra for the evaluation of conjugation phenomena.     

Untersuchungen zurFriedel-Crafts-Reaktion. XVI. Darstellung isomerer 2-Acyl- und 3-Acyl-4-methoxyphenole

Acylation of 4-methoxy phenol according toFriedel andCrafts, as well as the rearrangement of its esters according toFries lead always to 2-acyl-4-methoxy phenols or to their demethylated compounds. The unknown 3-acyl-4-methoxy phenols were prepared in two steps: First, the ester is acylated with the corresponding acyl chloride and SnCl₄ in nitromethane. In the second step the resulting ketoesters are hydrolysed. This is a general method. The yields ofmeta-acylphenols are between 40 and 90%. The isomeric 2-acyl-4-methoxy-phenols which were partly unknown or accessible only in low yields have also been prepared for comparative spectral studies (UV, IR, NMR, MS) ofortho- andmeta-acylphenols.

     

Theory of Stereomutation Dynamics and Parity Violation in Hydrogen Thioperoxide Isotopomers 1,2,3HSO1,2,3H

We present quantitative calculations of the mode‐selective stereomutation tunneling and parity violation in chiral hydrogen thioperoxide (‘oxadisulfane') isotopomers XSOY with X, Y=H, D, and T. The torsional tunneling stereomutation dynamics are investigated with a quasi‐adiabatic channel quasi‐harmonic reaction path Hamiltonian approach, which treats the torsional motion anharmonically in detail and all remaining coordinates as harmonic (but anharmonically coupled to the reaction coordinate). We predict how stereomutation is catalyzed or inhibited by excitation of various vibrational modes compared to the corresponding stereomutation dynamics of the vibrational ground state. Parity‐violating potentials were calculated with our recent multiconfiguration linear response (MC‐LR) approach in the random phase approximation (RPA). We find that, in agreement with general scaling expectations, the parity‐violating energy difference for the equilibrium structures of the two HSOH enantiomers (ca. 5×10^?12J mol^?1) is situated intermediate between HOOH and HSSH. Our results on the stereomutation dynamics and the influence of parity violation on these are discussed in relation to investigations for the analogous molecules H₂O₂, H₂S₂, and Cl₂S₂. As expected in XSOY (X, Y=H, D, and T), this influence is much larger than in the corresponding H₂O₂ isotopomers, but smaller than in H₂S₂ or Cl₂S₂.     

Reference Energies in Semiempirical Parametrizations

The MNDO scheme has been reparametrized for hydrocarbons using both molecular binding energies and heats of formation at 0 K as experimental reference data. Compared with MNDO, there are only minor changes in the optimized parameters, and the results are essentially of the same accuracy. These tests justify the use of heats of formation at 298 K as reference data in the original MNDO parametrization.     

Adhesive transfer of thin viscoelastic films

Micellar suspensions of acrylic diblock copolymers are excellent model materials for studying the adhesive transfer of viscoelastic solids. The micellar structure is maintained in films with a variety of thicknesses, giving films with a well-defined structure and viscoelastic character. Thin films were cast onto elastomeric silicone substrates from micellar suspensions in butanol, and the adhesive interactions between these coated elastomeric substrates and a rigid indenter were quantified. By controlling the adhesive properties of the film/indenter and film/substrate interfaces we were able to obtain very clean transfer of the film from the substrate to the portion of the glass indenter with which the film was in contact. Adhesive failure at the film/substrate interface occurs when the film/indenter interface is able to support an applied energy release rate that is sufficient to result in cavity nucleation at the film/substrate interface. Cavity formation is rapidly followed by delamination of the entire region under the indenter. The final stage in the transfer process involves the failure of the film that bridges the indenter and the elastomeric substrate. This film is remarkably robust and is extended to three times its original width prior to failure. Failure of this film occurs at the periphery of the indenter, giving a transferred film that conforms to the original contact area between the indenter and the coated substrate.     

Reply to the ‘Comment on “Uncommon structural and bonding properties in Ag16B4O10” by A. Lobato,Miguel Á. Salvadó, and J. Manuel Recio,Chem. Sci., 2021, 12, DOI: 10.1039/D1SC02152D

Where are the excess electrons in Ag₁₆B₄O₁₀?

Ag₁₆B₄O₁₀ features an exotic scheme of chemical bonding and extends the growing family of subvalent silver oxides. These findings constitute a new general and intrinsic facet of the chemistry of silver, which has not been fully understood, yet, and definitely deserves to be analysed from different perspectives. Against this background, we distinctly appreciate the efforts made by A. Lobato, Miguel Á. Salvadó, and J. Manuel Recio (LSR) in studying these phenomena at the example of the title compound.¹ While the computational results presented in the Comment article well comply with those published in our original paper,² the interpretations follow different routes. Whereas LSR focus on the analogy of pattern of the Electron Localization Function (ELF) in position space in the title compound with those found in elemental silver, we interpreted the electronic structure of Ag₁₆B₄O₁₀, both in position and reciprocal space, also considering the interactions between cationic and anionic partial structures.     

Probing the Binding Region of the Single-Stranded DNA-Binding Domain of Rat DNA Polymerase β Using Nanosecond-Pulse Laser-Induced Cross-Linking and Mass Spectrometry

In recent years, there has been a significant number of studies in which UV light has been used as a reagent to induce cross-links in nucleic acid-protein complexes. An area of considerable interest among those interested in structural biology is the garnering of information about the sites of cross-linking within the protein and nucleic acid members of photolinked conjugates, under the assumption that such knowledge should lead to identification of contact regions or sites within the native complexes. In this paper, we present our results from a photocross-linking study of the complex of the single-stranded DNA-binding domain of rat DNA polymerase β (pol β-ss) with the oligonucleotide d(ATATATA). In this study, we have used single nanosecond laser pulses as the cross-linking reagent and matrix-assisted laser desorp-tion/ionization-time of flight mass spectrometry as an analytical tool to identify cross-linked peptides purified from proteolytic digests of the cross-linked complex. Six cross-linked peptides have been identified in tryptic digests of the protein-oligonucleotide conjugates that result from irradiation of the pol β-ss-d(ATATATA) complex with a single laser pulse. Comparisons with NMR data in the literature for the same complex show that each of the cross-linked peptides contains amino acids that are in contact with the nucleic acid component of the complex.     

Diamond Quantum Devices in Biology

The currently available techniques for molecular imaging capable of reaching atomic resolution are limited to low temperatures, vacuum conditions, or large amounts of sample. Quantum sensors based on the spin‐dependent photoluminescence of nitrogen‐vacancy (NV) centers in diamond offer great potential to achieve single‐molecule detection with atomic resolution under ambient conditions. Diamond nanoparticles could also be prepared with implanted NV centers, thereby generating unique nanosensors that are able to traffic into living biological systems. Therefore, this technique might provide unprecedented access and insight into the structure and function of individual biomolecules under physiological conditions as well as observation of biological processes down to the quantum level with atomic resolution. The theory of diamond quantum sensors and the current developments from their preparation to sensing techniques have been critically discussed in this Minireview.     

Self‐Sufficient Formaldehyde‐to‐Methanol Conversion by Organometallic Formaldehyde Dismutase Mimic

The catalytic networks of methylotrophic organisms, featuring redox enzymes for the activation of one‐carbon moieties, can serve as great inspiration in the development of novel homogeneously catalyzed pathways for the interconversion of C₁ molecules at ambient conditions. An imidazolium‐tagged arene–ruthenium complex was identified as an effective functional mimic of the bacterial formaldehyde dismutase, which provides a new and highly selective route for the conversion of formaldehyde to methanol in absence of any external reducing agents. Moreover, secondary amines are reductively methylated by the organometallic dismutase mimic in a redox self‐sufficient manner with formaldehyde acting both as carbon source and reducing agent.