Systematic tuning of the reactivity of [RuII(terpy)(N^N)Cl]Cl complexes

Abstract

The substitution behavior of the [Ru^II(terpy)(ampy)Cl]Cl (terpy = 2,2′:6′,2′′-terpyridine, ampy = 2-(aminomethyl)pyridine) complex in water with several bio-relevant ligands such as chloride, thiourea and N,N′-dimethylthiourea, was investigated and compared with the reactivity of the [Ru^II(terpy)(bipy)Cl]Cl and [Ru^II(terpy)(en)Cl]Cl (bipy =2,2′-bipyridine and en?=?ethylenediamine) complexes. Earlier results have shown that the reactivity and pK_a values of Ru(II) complexes can be tuned by a systematic variation of electronic effects provided by bidentate spectator chelates. The reactivity of both the chlorido and aqua derivatives of the studied Ru(II) complexes increases in the order [Ru^II(terpy)(bipy)X]^+/2+?<?[Ru^II(terpy)(ampy)X]^+/2+?<?[Ru^II(terpy)(en)X]^+/2+. This finding can be accounted for in terms of π back-bonding effects provided by the pyridine ligands. The activation parameters for all the studied reactions support an associative interchange substitution mechanism.     

THE α-OXIDASE SYSTEM OF YOUNG PEA LEAVES (Pisum sativum) AS GENERATOR OF ELECTRONICALLY EXCITED STATES. EXCITATION IN THE DARK UNDER NATURAL CONDITIONS

Abstract. The aerobic oxidation of saturated long chain fatty acids to the lower aldehyde and CO₂ catalyzed by the α-oxidase system of young leaves from germinating Pisum sativum results in concomitant excitation of the chloroplasts or/and fractions present in the α-oxidase preparation. The excitation is attested to by both chlorophyll emission and Hill activity. This is the first case of photobiochemistry without light within a natural system.     

Maximum likelihood-based analysis of single-molecule photon arrival trajectories

In this work we explore the statistical properties of the maximum likelihood-based analysis of one-color photon arrival trajectories. This approach does not involve binning and, therefore, all of the information contained in an observed photon strajectory is used. We study the accuracy and precision of parameter estimates and the efficiency of the Akaike information criterion and the Bayesian information criterion (BIC) in selecting the true kinetic model. We focus on the low excitation regime where photon trajectories can be modeled as realizations of Markov modulated Poisson processes. The number of observed photons is the key parameter in determining model selection and parameter estimation. For example, the BIC can select the true three-state model from competing two-, three-, and four-state kinetic models even for relatively short trajectories made up of 2 × 10(3) photons. When the intensity levels are well-separated and 10(4) photons are observed, the two-state model parameters can be estimated with about 10% precision and those for a three-state model with about 20% precision.     

Preparation and Characterization of Carbon Nano‐Onion/PEDOT:PSS Composites

Composites of unmodified or oxidized carbon nano‐onions (CNOs/ox‐CNOs) with poly(3,4‐ethylenedioxythiophene):poly(styrenesulfonate) (PEDOT:PSS) are prepared with different compositions. By varying the ratio of PEDOT:PSS relative to CNOs, CNO/PEDOT:PSS composites with various PEDOT:PSS loadings are obtained and the corresponding film properties are studied as a function of the polymer. X‐ray photoelectron spectroscopy characterization is performed for pristine and ox‐CNO samples. The composites are characterized by scanning and transmission electron microscopy and differential scanning calorimetry studies. The electrochemical properties of the nanocomposites are determined and compared. Doping the composites with carbon nanostructures significantly increases their mechanical and electrochemical stabilities. A comparison of the results shows that CNOs dispersed in the polymer matrices increase the capacitance of the CNO/PEDOT:PSS and ox‐CNO/PEDOT:PSS composites.     

Development of polyaniline microarray electrodes for cadmium analysis

Disposable screen-printed electrodes (SPCE) were modified using a cosmetic product to partially block the electrode surface in order to obtain a microelectrode array. The microarrays formed were electropolymerized with aniline. Scanning electron microscopy was used to evaluate the modified and polymerized electrode surface. Electrochemical characteristics of the constructed sensor for cadmium analysis were evaluated by cyclic and square-wave voltammetry. Optimized stripping procedure in which the preconcentration of cadmium was achieved by depositing at ?1.20 V (vs. Ag/AgCl) resulted in a well defined anodic peak at approximately ?0.7 V at pH 4.6. The achieved limit of detection was 4 × 10^?9 mol dm^?3. Spray modified and polymerized microarray electrodes were successfully applied to quantify cadmium in fish sample digests.     

Dealing with repetitions in sequencing by hybridization

DNA sequencing by hybridization (SBH) induces errors in the biochemical experiment. Some of them are random and disappear when the experiment is repeated. Others are systematic, involving repetitions in the probes of the target sequence. A good method for solving SBH problems must deal with both types of errors. In this work we propose a new hybrid genetic algorithm for isothermic and standard sequencing that incorporates the concept of structured combinations. The algorithm is then compared with other methods designed for handling errors that arise in standard and isothermic SBH approaches. DNA sequences used for testing are taken from GenBank. The set of instances for testing was divided into two groups. The first group consisted of sequences containing positive and negative errors in the spectrum, at a rate of up to 20%, excluding errors coming from repetitions. The second group consisted of sequences containing repeated oligonucleotides, and containing additional errors up to 5% added into the spectra. Our new method outperforms the best alternative procedures for both data sets. Moreover, the method produces solutions exhibiting extremely high degree of similarity to the target sequences in the cases without repetitions, which is an important outcome for biologists. The spectra prepared from the sequences taken from GenBank are available on our website http://bio.cs.put.poznan.pl/.