Conformational analysis of self-organized monolayers with scanning tunneling microscopy at near-atomic resolution

We describe the synthesis and a novel approach to the conformational analysis of 2,2'-bipyridines (bpy) bearing aromatic rich Frechet-type dendritic wedges of the first and second generation as substituents. The evaporation of solutions of these new ligands on graphite surfaces under ambient conditions results in the formation of self-organized monolayers. Scanning tunneling microscopy (STM) investigations of the monolayers under ambient conditions (air, 298 K) gave images at submolecular and near-atomic resolution. The analysis of the STM images includes the following processes: (i) identification and reproduction of potential homoconformational domains, (ii) exclusion of improper data using quality criteria for drift and feedback artifacts, (iii) compilation of running averages and checking for averaging artifacts, (iv) analysis of three-dimensional and contour plots, (v) calculation of the HOMO properties of the free molecules, and (vi) final conformational assignment based on all accessible information. Following this procedure, two different conformations could be assigned to domains observed in the monolayers of the first-generation (G1) and second-generation (G2) dendritic compounds. Homoconformational domains are observed side-by-side. The different conformations arise from syn or anti arrangements at the ether substituents. An additional conformational effect is found upon treating the G1 domains with HCl gas, when a partial rearrangement of the bpy from trans to cis occurs, concomitant with protonation.     

Structure and properties of the dendron-encapsulated polyoxometalate (C(52)H(60)NO(12))(12)[(Mn(H(2)O))(3)(SbW(9)O(33))(2)], a first generation dendrizyme

Combining analytical and theoretical methods, we present a detailed study of a heteropolytungstate cluster encapsulated in a shell of dendritically branching surfactants, namely (C(52)H(60)NO(12))(12)[(Mn(H(2)O))(3)(SbW(9)O(33))(2)], 3. This novel surfactant-encapsulated cluster (SEC) self-assembles spontaneously from polyoxometalate-containing solutions treated with a stoichiometric amount of dendrons. Compound 3 exhibits a discrete supramolecular architecture in which a single polyoxometalate anion resides in a compact shell of dendrons. Our approach attempts to combine the catalytic activity of polyoxometalates with the steric properties of tailored dendritic surfactants into size-selective catalytic systems. The structural characterization of the SEC is based on analytical ultracentrifugation (AUC) and small-angle neutron scattering (SANS). The packing arrangement of dendrons at the cluster surface is gleaned from molecular dynamics (MD) simulations, which suggests a highly porous shell structure due to the dynamic formation of internal clefts and cavities. From analysis of the MD trajectory of 3, a theoretical neutron-scattering function is derived that is in good agreement with experimental SANS data. Force field parameters used in MD simulations are partially derived from a quantum mechanical geometry optimization of [(Zn(H(2)O))(3)(SbW(9)O(33))(2)](12)(-), 2b, at the density functional theory (DFT) level. DFT calculations are corroborated by X-ray structure analysis of Na(6)K(6)[(Zn(H(2)O))(3)(SbW(9)O(33))(2)].23H(2)O, which is isostructural with the catalytically active Mn derivative 2a. The combined use of theoretical and analytical methods aims at rapidly prototyping smart catalysts ("dendrizymes"), which are structurally related to naturally occurring metalloproteins.     

Oxydation von Allylalkoholen mit Blei(IV)-acetat

Lead tetraacetate (LTA) oxidation of the allylic alcohols 1, 10, 14 and 19 leads to the formation of the epoxides 2, 11, 15 and 20 , products of a novel internal addition reaction of the electron deficient alcohol oxygen to the allylic double bond. In some cases ( 10, 14 ) the formation of a new type of acetoxylated enolethers ( 12, 16 ) is observed. The LTA oxidation of the allylic dienols 21 and 29 gives rise to the formation of the epoxyacetates 25 and 33 , products of a similar internal addition reaction. Furthermore, a variety of cyclization products ( 22, 23, 24, 26, 30, 31, 32 and 34 ) has been isolated whose formation requires an isomerisation of the allylic trans double bond to a cis one.     

Biosynthesis of flavocoenzymes

The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate. The imidazole ring of GTP is hydrolytically opened, yielding a 2,5-diaminopyrimidine that is converted to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione by a sequence of deamination, side chain reduction, and dephosphorylation. Condensation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione with 3,4-dihydroxy-2-butanone 4-phosphate obtained from ribulose 5-phosphate affords 6,7-dimethyl-8-ribityllumazine. Dismutation of the lumazine derivative yields riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, which is recycled in the biosynthetic pathway. The enzymes of the riboflavin pathway are potential targets for antibacterial agents.     

Impact of Transition Metal Substituents on Polysilane Properties: Iron versus Ruthenium

Summary. The previously unknown ruthenio disilanes Rp–Si₂Me₄–C₆H₄X (Rp = η⁵-C₅H₅Ru(CO)₂; X = H, Br, –CHO, CH=C(CN)₂) were synthesized from ClSi₂Me₄C₆H₄X (X = H, Br) and Rp⁻ using conventional chemical methods. Trends in the UV/Vis absorption spectra indicate strong electronic coupling within the Rp–Si–Si–C_aryl fragment and, therefore, closely resemble the ones observed for the corresponding iron complexes. The four compounds however, were shown to be less sensitive towards UV irradiation. The crystal structure of Rp–Si₂Me₄–C₆H₄CH=C(CN)₂ was determined by X-ray diffraction and exhibits an all-trans-array of the Ru–Si–Si–C_aryl moiety, what is a basic requirement for optimal through-bond interaction.     

Total synthesis of the marine alkaloid halitulin

The structure of the strongly cytotoxic marine alkaloid halitulin (1) has been confirmed by total synthesis and its absolute configuration determined as (15S). The synthesis follows a strategy previously reported by one of us and uses an efficient preparation of the quinoline-7,8-diol unit by modified Baeyer-Villiger and Skraup reactions. The O-benzyl protecting groups were removed in the last step of the synthesis by transfer hydrogenolysis without concomitant reduction of the quinoline ring. The method can be applied for the synthesis of halitulin analogues.     

Development of a beam of very slow polarized muons

During the last few decades, a variety of methods has been developed which makes use of polarized positive muons as a microscopic probe of the magnetic properties of condensed matter (muon spin rotation, relaxation, resonance,SR). Until now, available beams for SR studies have delivered 100% polarized muons with energies in the MeV range, resulting in a deep penetration of the muons into the sample material under investigation. This presently limits the applications of theSR technique to the study of the bulk characteristics of matter. To be able to control the implantation depth, a very low energy beam of polarized muons is being developed at the Paul Scherrer Institute. Very slow polarized muons (kinetic energy 10 eV, polarization 90%) are obtained from the moderation of a high energy muon beam in a thin film of an appropriate condensed gas. These muons can be used as a source for a beam of tunable energy between a few tens of eV and some tens of keV. Implantation depths in the range of few to a few hundreds of nanometers can thus be achieved by varying the energy.     

Non-reactive metal/semiconductor interfaces: a combined AES,AFM andPAC study

Thin In films on Ge(100), Si(100) andSi(111) are investigated using Auger-electron spectroscopy (AES), atomic force microscopy (AFM) andperturbed -angular correlation (PAC) spectroscopy, respectively. The growth mode of the metal films is characterized by in situ AES measurements, indicating distinct differences between the different substrate surfaces. Additional AFM investigations are used to monitor the film topography at higher metal coverage. Finally, the local crystalline structure of the films is studied by the PAC technique.