High-affinity small molecule-phospholipid complex formation: binding of siramesine to phosphatidic acid

Siramesine (SRM) is a sigma-2 receptor agonist which has been recently shown to inhibit growth of cancer cells. Fluorescence spectroscopy experiments revealed two distinct binding sites for this drug in phospholipid membranes. More specifically, acidic phospholipids retain siramesine on the bilayer surface due to a high-affinity interaction, reaching saturation at an apparent 1:1 drug-acidic phospholipid stoichiometry, where after the drug penetrates into the hydrocarbon core of the membrane. This behavior was confirmed using Langmuir films. Of the anionic phospholipids, the highest affinity, comparable to the affinities for the binding of small molecule ligands to proteins, was measured for phosphatidic acid (PA, mole fraction of X(PA) = 0.2 in phosphatidylcholine vesicles), yielding a molecular partition coefficient of 240 +/- 80 x 10(6). An MD simulation on the siramesine:PA interaction was in agreement with the above data. Taking into account the key role of PA as a signaling molecule promoting cell growth our results suggest a new paradigm for the development of anticancer drugs, viz. design of small molecules specifically scavenging phospholipids involved in the signaling cascades controlling cell behavior.     

An Experimental Study of the Kinetics of the Reactions of Isopropyl,sec‐Butyl,and tert‐Butyl Radicals with Molecular Chlorine at Low Pressures (0.5–7.0 Torr) in the Temperature Range 190–480 K

In this work, we have measured the rate coefficients of the reactions of isopropyl (propan‐2‐yl), sec‐butyl (butan‐2‐yl), and tert‐butyl (2‐methylpropan‐2‐yl) radicals with molecular chlorine as a function of temperature (190–480 K). The experiments were done in a tubular laminar flow reactor coupled to a photoionization quadrupole mass spectrometer employing a gas‐discharge lamp for ionization. The radicals were homogeneously produced in the reactor by photolyzing suitable precursor molecules with 193‐nm pulsed exciplex laser radiation. The bimolecular rate coefficients were obtained by monitoring the radical decay signals in real time under pseudo–first‐order conditions. The rate coefficients of all three reactions showed negative temperature dependence. The bath gas used in the experiments was helium, and the rate coefficients appeared to be independent of the helium concentrations employed ([2.4–14] × 10¹⁶ cm^?3) for all three reactions. The rate coefficients of the reactions can be approximated in the studied temperature range by the following parameterizations: We estimate that the overall uncertainties of the measured rate coefficients are ±20%. We were able to observe 2‐chloropropane (i‐C₃H₇Cl) product for the i‐C₃H₇^● + Cl₂ reaction. No products were observed for the other two reactions, and the reasons for this are briefly discussed in the text.     

Azobenzene-linked porphyrin-fullerene dyads

A new group of porphyrin-fullerene dyads with an azobenzene linker was synthesized, and the photochemical and photophysical properties of these materials were investigated using steady-state and time-resolved spectroscopic methods. The electrochemical properties of these compounds were also studied in detail. The synthesis involved oxidative heterocoupling of free base tris-aryl-p-aminophenyl porphyrins with a p-aminophenylacetal, followed by deprotection to give the aldehyde, and finally Prato 1,3-dipolar azomethineylide cycloaddition to C60. The corresponding Zn(II)-porphyrin (ZnP) dyads were made by treating the free base dyads with zinc acetate. The final dyads were characterized by their 1H NMR, mass, and UV-vis spectra. 3He NMR was used to determine if the products are a mixture of cis and trans stereoisomers, or a single isomer. The data are most consistent with the isolation of only a single configurational isomer, assigned to the trans (E) configuration. The ground-state UV-vis spectra are virtually a superimposition of the spectral features of the individual components, indicating there is no interaction of the fullerene (F) and porphyrin (H2P/ZnP) moieties in the ground state. This conclusion is supported by the electrochemical data. The steady-state and time-resolved fluorescence spectra indicate that the porphyrin fluorescence in the dyads is very strongly quenched at room temperature in the three solvents studied: toluene, tetrahydrofuran (THF), and benzonitrile (BzCN). The fluorescence lifetimes of the dyads in all solvents are sharply reduced compared to those of H2P and ZnP standards. In toluene, the lifetimes of the free base dyads are 600-790 ps compared to 10.1 ns for the standard, while in THF and BzCN the dyad lifetimes are less than 100 ps. For the ZnP dyads, the fluorescence lifetimes were 10-170 ps vs 2.1-2.2 ns for the ZnP references. The mechanism of the fluorescence quenching was established using time-resolved transient absorption spectroscopy. In toluene, the quenching process is singlet-singlet energy transfer (k approximately 10(11) s-1) to give C60 singlet excited states which decay with a lifetime of 1.2 ns to give very long-lived C60 triplet states. In THF and BzCN, quenching of porphyrin singlet states occurs at a similar rate, but now by electron transfer, to give charge-separated radical pair (CSRP) states, which show transient absorption spectra very similar to those reported for other H2P-C60 and ZnP-C60 dyad systems. The lifetimes of the CSRP states are in the range 145-435 ns in THF, much shorter than for related systems with amide, alkyne, silyl, and hydrogen-bonded linkers. Thus, both forward and back electron transfer is facilitated by the azobenzene linker. Nonetheless, the charge recombination is 3-4 orders of magnitude slower than charge separation, demonstrating that for these types of donor-acceptor systems back electron transfer is occurring in the Marcus inverted region.     

Ion pair recognition of quaternary ammonium and iminium salts by uranyl-salophen compounds in solution and in the solid state

Efficient ditopic receptors for quaternary ammonium and iminium salts have been obtained upon functionalization of the uranyl-salophen unit with conformationally flexible side arms bearing phenyl or beta-naphthyl substituents. Binding affinities in chloroform solution have been measured for a large number of quaternary salts comprising tetramethylammonium (TMA), tetrabutylammonium (TBA), acetylcholine (ACh), N-methylpyridinium (NMP), and N-methylisoquinolinium (NmiQ) cations. Recognition of the anion partner is ensured by coordination to the hard Lewis acidic uranyl center, whereas cation-pi/CH-pi interactions of the quaternary ions are established with the aromatic pendants. The role of the cation-anion interactions on the dynamics of exchange between the free and complexed species is discussed. Solid-state structures have been obtained for a few salt-receptor combinations. In the solid state, side-armed receptor molecules form assemblies that enclose ion pair aggregates of varying composition and structure, including AChCl dimers, two different kinds of tetrameric (TMA)Cl clusters, and unidimentional salt strips of (NMP)Br. The lack of side arms as preferential binding sites for the polar quaternary cations prevents association patterns of the kinds formed with the side-armed receptors, as shown by the crystal structure of the complex of (TMA)Cl with the parent uranyl-salophen receptor.     

Three-component entanglements consisting of three crescent-shaped bidentate ligands coordinated to an octahedral metal centre

3,3'-biisoquinoline ligands (biiq) L, bearing aromatic substituents on their 8 and 8' positions, have been used to generate interwoven systems consisting of three crescent-shaped ligands disposed around an octahedral metal centre. Mono-ligand complexes of the type [ReL(CO)3py]+ (py: pyridine) have also been prepared, leading to sterically non-hindering complexes in spite of the endotopic nature of the chelate used. The three-component entanglements have been prepared by using either FeII or RuII as gathering metal centre. The synthetic procedure is simple and efficient, affording fully characterised complexes as their PF6 or SbCl6 salts. X-ray crystallography clearly shows that the crescent-shaped ligands do not repel each other in the tris-chelate complexes. In an analogous way, the ReI complexes show open structures with no steric repulsion between the L ligand and the ancillary CO or py groups. The FeL3 or RuL3 compounds are very unusual in the sense that, contrary to all the other tris-bidentate chelate complexes made till now, the three organic components are tangled up, in a situation which will be very favourable to the formation of new non trivial topologies of the catenane type.     

Solvent exchange in thermally stable resorcinarene nanotubes

The assembly of C-methyl resorcinarene into a tubular supramolecular solid-state structure, its thermal stability, and its hosting properties are reported. Careful control of the crystallisation conditions of C-methyl resorcinarene and 1,4-dimethyl-1,4-diazoniabicyclo[2.2.2]octane (1,4-dimethyl DABCO) dibromide leads to a formation of two crystallographically different, but structurally very similar, solid-state nanotube structures. These structures undergo a remarkable variety of supramolecular interactions, which lead to the formation of 0.5 nm diameter nonpolar tubes through the crystal lattice. The formation of these tubes is templated by suitably sized small alcohols, namely, n-propanol, 2-propanol, or n-butanol. The self-assembly involves close pi...pi interactions between the adjacent resorcinarenes, and C--H...pi and cation...pi interactions between the resorcinarenes and the guest 1,4-dimethyl DABCO dications. The crystals of these supramolecular tube structures are thermally very stable and the included solvent alcohol can be removed from the tubes without breaking the single-crystalline structure of the assembly. After removal of the solvent molecules the tubes can be filled with other small, less polar solvent molecules such as dichloromethane.     

Diffusion of Tracer in Altered Tonalite: Experiments and Simulations with Heterogeneous Distribution of Porosity

Numerical time-domain-diffusion simulations were used for studying the diffusion behavior of tracer molecules in rock matrix with homogeneous and heterogeneous porosity. As the heterogeneous sample in these simulations, a 3D tomographic image of altered tonalite was used, in which the mineral components and the pores resolved by X-ray microtomography were represented by their respective intragranular porosities determined previously by the ¹⁴C-PMMA method. The apparent diffusion coefficient of a tracer in altered tonalite was determined experimentally, and was then used in the simulations. In the altered tonalite analyzed, inclusion of heterogeneity in the porosity increased the diffusion coefficient by 16 %. Altered and pristine feldspar was the main mineral component in the sample (72 %), and it also provided the dominant contribution to tracer diffusion, explaining alone 52 % of the diffusion coefficient. The large pores resolved by microtomography (6 %) and altered and pristine mica (22 %) gave an equal contribution to the diffusion coefficient. The simulation method applied was also validated by comparing the results to both an analytical and a numerical solution to the diffusion equation in a homogenous medium. In addition, the method was compared to discrete-time random-walk simulations in the case of randomly placed overlapping spheres.     

Preparation and properties of cellulose/PE-co-AA blends

Cellulose/polyethylene-co-acrylic acid blends (cellulose concentration 0–50 wt.%) was prepared via mixing their alkaline solutions. The formed suspension was precipitated and dried, where after the morphology as well the thermal and mechanical properties of the blends were characterized by Differential Scanning Calorimetry (DSC), Scanning Electron Microscopy (SEM), and Dynamic Mechanical Analyses (DMA). In addition, the melt properties of the blend were studied by rotational rheometer following some injection molding trials as well. The polymers were found to be dispersed homogenously in the blend and the crystallization temperature of the PE-co-AA phase was increased ～6 °C due to the nucleation ability of the cellulose phase. The size of the discontinuous cellulose phase was 5 μm at the most while at higher cellulose concentrations (30–50 wt.%) the polymers formed co-continuous morphology in the blend. This change in the morphology was observed also in their melt properties which showed that the blend reached so called percolation point at ～20 wt.% of cellulose. Finally, the blends were found to be injection moldable over the whole composition range, if only the injection molding became more challenging (i.e. higher mold temperatures and longer mold cooling times were required) after the percholation point.     

Kinetic (T = 201-298 K) and equilibrium (T = 320-420 K) measurements of the C3H5 + O2 ⇆ C3H5O2 reaction

The kinetics and equilibrium of the allyl radical reaction with molecular oxygen have been studied in direct measurements using temperature-controlled tubular flow reactor coupled to a laser photolysis/photoionization mass spectrometer. In low-temperature experiments (T = 201-298 K), association kinetics were observed, and the measured time-resolved C(3)H(5) radical signals decayed exponentially to the signal background. In this range, the determined rate coefficients exhibited a negative temperature dependence and were observed to depend on the carrier-gas (He) pressure {p = 0.4-36 Torr, [He] = (1.7-118.0) × 10(16) cm(-3)}. The bimolecular rate coefficients obtained vary in the range (0.88-11.6) × 10(-13) cm(3) s(-1). In higher-temperature experiments (T = 320-420 K), the C(3)H(5) radical signal did not decay to the signal background, indicating equilibration of the reaction. By measuring the radical decay rate under these conditions as a function of temperature and following typical second- and third-law procedures, plotting the resulting ln K(p) values versus 1/T in a modified van't Hoff plot, the thermochemical parameters of the reaction were extracted. The second-law treatment resulted in values of ΔH(298)° = -78.3 ± 1.1 kJ mol(-1) and ΔS(298)° = -129.9 ± 3.1 J mol(-1) K(-1), with the uncertainties given as one standard error. When results from a previous investigation were taken into account and the third-law method was applied, the reaction enthalpy was determined as ΔH(298)° = -75.6 ± 2.3 kJ mol(-1).