Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings

A simple and robust method for determining the relative orientations of covalently linked protein domains using conjoined rigid body/torsion angle dynamics simulated annealing on the basis of residual dipolar couplings is presented. In this approach each domain is treated as a rigid body and the relevant degrees of conformational freedom are restricted to the backbone torsion angles (phi, psi) of the linker between the domains. By this means translational information afforded by the presence of an intact linker is preserved. We illustrate this approach using the domain-swapped dimer of the HIV-inactivating protein cyanovirin-N as an example.     

On Relativistic Collisional Invariants

Two simple proofs of the result that a relativistic summational invariant is a linear combination of the momentum four-vector p are given by assuming that is a continuous and differentiable function of class C ². The results can be extended to the case when is just assumed to be a generalized function.     

Convergence of Appell Polynomials of Long Range Dependent Moving Averages in Martingale Differences

We study limit distribution of partial sums S_N,k(t) = _{s = 1} ^{[N t]} A_k(X_s) of Appell polynomials of the long-range dependent moving average process X_t> = _{i t} b_{t - i i}, where {_i} is a strictly stationary and weakly dependent martingale difference sequence, and b_i i^{d - 1} (0 < d < 1/2). We show that if k(1-2 d)<1, then suitably normalized partial sums S_N,k(t) converge in distribution to the kth order Hermite process. This result generalizes the corresponding results of Surgailis, and Avram and Taqqu obtained in the case of the i.i.d. sequence { _i}.     

Cyclic Cohomology of étale Groupoids: The General Case

We give a general method for computing the cyclic cohomology of crossed products by étale groupoids, extending the Feigin–Tsygan–Nistor spectral sequences. In particular we extend the computations performed by Brylinski, Burghelea, Connes, Feigin, Karoubi, Nistor, and Tsygan for the convolution algebra C _c (G) of an étale groupoid, removing the Hausdorffness condition and including the computation of hyperbolic components. Examples like group actions on manifolds and foliations are considered.     

Low-energy behavior of the 3He(α, γ)7Be cross section

Cross sections for the ³He(α, γ)⁷Be reaction have been measured at several energies from E_c.m. = 165 to 1169 keV by counting prompt γ-rays from a windowless, differentially pumped, recirculating, ³He gas target. The cross-section factor S₃₄(E_c.m.) and branching ratio γ₁/γ₀ were determined at each energy. Cross sections were also measured at E_c.m. = 947 and 1255 keV by counting the γ-rays from the ⁷Be produced in a ³He gas cell with a Ni entrance foil. Combining the results of these two independent experiments yields a zero-energy intercept for the cross-section factor of S₃₄(0) = 0.53 ± 0.03 keV · b. The relationship between these measurements and several theoretical calculations, and the import of the extrapolated cross section for the solar-neutrino problem are discussed.     

Strain-induced reorientation and mobility in nematic liquid-crystalline elastomers as studied by time-resolved FTIR spectroscopy

Polarized Fourier transform infrared (FTIR) spectroscopy is employed to study the segmental orientation and mobility of liquid-crystalline elastomers (LCEs) with a monodomain structure in response to external mechanical fields parallel and perpendicular to the initial nematic director. The mean orientation and the molecular order parameter of the different molecular moieties referring to the mesogen, the spacer and the network are analyzed in detail. Parallel stretch leaves the mean orientation of the different molecular moieties and its molecular order parameter nearly uninfluenced. Perpendicular stretch results in a threshold-like dependence: for elongation ratios λ ⩽ λ_c = 1.3 (10 mol% crosslinker density), respectively λ ⩽ λ_c = 1.6 (5 mol% crosslinker density) no change of the mean orientation and the molecular order parameters is observed, while for λ ≥ λ_c all molecular units reorient and their molecular order parameters are strongly decreased. The present studies give no indications that the reorientational dynamics of the network and the mesogens differ as long as the elongation ratio is smaller than λ_c.     

The Stationary Navier-Stokes System in Nonsmooth Manifolds: The Poisson Problem in Lipschitz and <Emphasis Type="Italic">C</Emphasis><Superscript>1</Superscript> Domains

We consider the linearized version of the stationary Navier-Stokes equations on a subdomain of a smooth, compact Riemannian manifold M. The emphasis is on regularity: the boundary of is assumed to be only C¹ and even Lipschitz, and the data are selected from appropriate Sobolev-Besov scales. Our approach relies on the method of boundary integral equations, suitably adapted to the variable-coefficient setting we are considering here. Applications to the stationary, nonlinear Navier-Stokes equations in this context are also discussed.