Application of two-dimensional near-infrared correlation spectroscopy to protein research

The purpose of the present paper is to demonstrate the potential of generalized two-dimensional (2D) near-infrared (NIR) correlation spectroscopy in studies of hydration and structure of proteins. We describe here two examples. The first example is concerned with heat denaturation process of ovalbumin in aqueous solutions and the second one deals with isomerizations with varying pH of serum albumin. New insight has been obtained into the hydration and unfolding process of secondary structures of ovalbumin and serum albumin by studying temperature- or pH-dependent correlation patterns in 2D synchronous and asynchronous spectra. Generalized 2D NIR correlation spectroscopy emphasizes spectral features not readily observable in conventional one-dimensional spectra, enabling to extract subtle but valuable structural changes concerning with the protein denaturation.     

A lattice Boltzmann method for a two-phase flow containing solid bodies with viscoelastic membranes

A lattice Boltzmann method (LBM) for two-phase flows containing solid bodies with viscoelastic membranes is proposed. The method is based on the two-phase LBM, in which one phase is regarded as the solid phase. In the present model, the membrane is assumed to be composed of identical particles that are connected to their neighboring particles by elastic springs to take account of stretching and compression effects. The method is applied to two representative problems, namely the behavior of a viscoelastic body under shear flow and the motion of a viscoelastic body in a Poiseuille flow. Tank-tread motion and axial migration, which are both characteristic of the motion of viscoelastic bodies, are simulated by using the method. These results indicate that the method is capable of simulating the complex behavior of viscoelastic bodies in capillaries, such as the motion of red blood cells in blood flows.     

Aerosol generation and measurement of multi-wall carbon nanotubes

Mass production of some kinds of carbon nanotubes (CNT) is now imminent, but little is known about the risk associated with their exposure. It is important to assess the propensity of the CNT to release particles into air for its risk assessment. In this study, we conducted aerosolization of a multi-walled CNT (MWCNT) to assess several aerosol measuring instruments. A Palas RBG-1000 aerosol generator applied mechanical stress to the MWCNT by a rotating brush at feed rates ranging from 2 to 20 mm/h, which the MWCNT was fed to a two-component fluidized bed. The fluidized bed aerosol generator was used to disperse the MWCNT aerosol once more. We monitored the generated MWCNT aerosol concentrations based on number, area, and mass using a condensation particle counter and nanoparticle surface area monitor. Also we quantified carbon mass in MWCNT aerosol samples by a carbon monitor. The shape of aerosolized MWCNT fibers was observed by a scanning electron microscope (SEM). The MWCNT was well dispersed by our system. We found isolated MWCNT fibers in the aerosols by SEM and the count median lengths of MWCNT fibers were 4–6 μm. The MWCNT was quantified by the carbon monitor with a modified condition based on the NIOSH analytical manual. The MWCNT aerosol concentration (EC mass base) was 4 mg/m³ at 2 mm/h in this study.     

Determining spin through quantum azimuthal-angle correlations

Determining the spin of new particles is critical in identifying the true theory among various extensions of the Standard Model at the next generation of colliders. Quantum interference between different helicity amplitudes was shown to be effective when the final state is fully reconstructible. However, many interesting new physics processes allow only for partial reconstruction. In this Letter, we show how the interference effect can be unambiguously extracted even in processes that have two-fold ambiguity, by considering the correlation between two decay planes in e⁺e⁻$e^{+}{e}^{-}$ collisions.     

Antibacterial metal implant with a TiO2‐conferred photocatalytic bactericidal effect against Staphylococcus aureus

Photocatalysis with anatase Titanium dioxide (TiO₂) under ultraviolet A (UVA) has a well recognized bactericidal effect. There have been a few reports, however, on the effects of photocatalysis on bio‐implant‐related infections. The purpose of present study was to evaluate the photocatalytic bactericidal effects of anatase TiO₂ on Staphylococcus aureus (S. aureus) associated with surgical site infections. TiO₂ films were synthesized on commercially pure titanium substrates and SUS316 stainless steel using a plasma source ion implantation method followed by annealing. The chemical composition of the surface layers was determined using GXRD and XPS. The disks were seeded with cultured S. aureus and exposed to UVA illumination from black light. The bactericidal effect of the TiO₂ films was evaluated by counting the survived colonies statistically. A structural gradient anatase type TiO₂ layer formed on all substrates. The viability of the bacteria on the photocatalytic TiO₂ film coated on titanium was suppressed to 7.0% at 30 minutes and 5.5% at 45 minutes, whereas that on a similarly coated stainless steel was suppressed to 45.8% at 30 minute and 28.6% at 45 minutes (ANOVA: p < 0.05). Complete bacterial inactivation was achieved after 90 minutes on titanium and after 60 minutes on stainless steel. The photocatalytic bactericidal effect of TiO₂ is useful for sterilizing the contaminated surfaces of bioimplants. Copyright © 2008 John Wiley & Sons, Ltd.     

The effect of artifacts on dependence measurement in fMRI

The study of effective connectivity by means of neuroimaging depends on the measurement of similarity between activity patterns at different locations in the brain, without necessarily presupposing a particular model for this dependence. When these interactions are measured using functional magnetic resonance imaging (fMRI) techniques, however, imaging and physiological artifacts create patterns of dependence that may be unrelated to cortical activity. We demonstrate some of these effects through the measurement of short-range dependencies present in fMRI scans of the primary visual cortex (V1) in the anaesthetized macaque monkey. High-field (4.7 T) fMRI scans were conducted to measure responses based on the blood oxygen level-dependent contrast mechanism, during periods of no sensory stimulation and of visual stimulation with rotating polar-transformed checkerboard gratings. Dependence between the haemodynamic activity at different spatial locations (i.e., different voxels) was measured using correlation, mutual information and functional covariance. Particular attention was paid to understanding the sources of spurious dependence that may be observed during such investigations. Two main effects were detected: (a) short-range correlations introduced by the process of image reconstruction and (b) perturbations in the haemodynamic response caused by breathing. The image reconstruction artifacts were shown to create an artificially high short-range dependence in the readout direction of the scan, and the breathing artifacts caused enhanced short-range dependence in both the readout and phase-encode directions. Additional dependence in the phase-encode direction due to image-ghosting is also possible but will not be discussed in this report, as it can be alleviated by fine adjustment of preemphasis (elimination of eddy currents). A technique is described for removing breathing artifacts, and the effect of breathing on the apparent dependence between voxels is illustrated. The correlation of haemodynamic activity with the stimulus was found to be affected by breathing, although this effect can be neutralised by averaging the haemodynamic responses over many repetitions of the stimulus. Nonetheless, patterns of dependent activity between voxels may be lost in this averaging process, which makes the removal of breathing artifacts necessary if statistical dependence and the study of effective connectivity is the primary aim of an investigation.     

Collective motion of microspheres in suspensions observed by phase-mode dynamic ultrasound scattering technique

Compared with a nano-sized particle, dynamics of a micron-sized particle in a liquid is often associated with sedimentation (or floating) due to its relatively large mass. The motion of more than two particles is dominated by the hydrodynamic interactions, which are known to persist over a fairly long range, e.g., several millimeters, in suspensions. The particle size may be obtained from the dynamic ultrasound scattering (DSS) technique by the analysis of velocity fluctuations, whose origin is believed to take root in the particle-number fluctuations among temporally formed domains involving collective motion of particles with a certain cut-off length. In this study, such collective particle motion in highly turbid solutions was visualized by means of the phase-mode DSS technique with a single element transducer. Quantitative agreement between the velocity fluctuations obtained by the phase- and conventional amplitude-mode analyses was confirmed, followed by examination of the concentration and the particle size dependences on the dynamic structures induced by the long-ranged interactions. It was found that the phase mode-DSS was a promising method to evaluate the time-dependent structures of the micro-particles in highly turbid suspensions.     

NanoPARCEL: a method for controlling cellular behavior with external light

We developed a simple preparation procedure for the protein encapsulated nanoparticle and used the nanoparticle for spatiotemporal activity control of various proteins. We succeeded in the local protein activation within cells by light using the nanoparticle.