Promotion of sugar-lectin recognition through the multiple sugar presentation offered by regioselectively addressable functionalized templates (RAFT): a QCM-D and SPR study

The investigation of recognition events between carbohydrates and proteins, especially the understanding of how spatial factors and binding avidity are correlated, remains a great interest for glycobiology. In this context we have investigated by nanogravimetry (QCM-D) and surface plasmon resonance (SPR), the kinetics and thermodynamics of the interaction between concanavalin A (Con A) and various neoglycopeptide ligands of low molecular weight. Regioselectively addressable functionalized templates (RAFT) have been used as scaffolds for the design of multivalent neoglycopeptides bearing thiol or biotin functions for their anchoring on transducer surfaces. Although these multivalent neoglycopeptide ligands cannot span multiple binding sites within the same Con A protein, they have increased activities relative to their monovalent counterpart. Our results emphasize that the multivalent RAFT ligands function by clustering several lectins, which leads to enhanced affinities.     

Synthesis of CH2-linked alpha(2,3)sialylgalactose analogue: on the stereoselectivity of the key Ireland-Claisen rearrangement

A CH 2 -linked alpha(2,3)sialylgalactose analogue was efficiently synthesized using an Ireland-Claisen rearrangement, which was developed recently by our group for constructing a CF 2 -sialoside. The reaction conditions of the rearrangement were optimized for alpha-stereoselective formation of the CH 2 -sialoside. On the basis of the observed temperature effects, the origin of the stereoselectivity of the Ireland-Claisen rearrangement is discussed. Moreover, reconstruction of the 2alpha-hydroxyl group on the galactose unit of the rearrangement product was achieved by means of stereoselective dihydroxylation and deoxygenation.     

Optimized preparation and scanning electrochemical microscopy analysis in feedback mode of glucose oxidase layers grafted onto conducting carbon surfaces

An optimized immobilization procedure based on the electroreduction of aryldiazonium salt followed by covalent attachment of a cross-linked hydrogel was used to graft glucose oxidase on a carbon surface. Scanning electrochemical microscopy (SECM) and cyclic voltammetry were used to follow the construction steps of the modified electrode. By adjusting the compactness of the layer through the electrografting reaction, the penetration of the mediator through the layer can be controlled to allow the monitoring of the enzymatic activity by both cyclic voltammetry and SECM in feedback mode. The enzymatic activity of the film is finally characterized by SECM.     

Difluorocarbene Studied with Threshold Photoelectron Spectroscopy (TPES): Measurement of the First Adiabatic Ionization Energy (AIE) of CF2

The first photoelectron band of difluorocarbene CF₂, has been studied by threshold photoelectron (TPE) spectroscopy. CF₂ was prepared by microwave discharge of a flowing mixture of hexafluoropropene, C₃F₆, and argon. A vibrationally resolved band was observed in which at least twenty‐two components were observed. In the first PE band of CF₂, the adiabatic ionization energy differs significantly from the vertical ionization energy because, for the ionization CF₂⁺ (X?²A₁)+e^? ← CF₂ (X?¹A₁), there is an increase in the FCF bond angle (by ≈20°) and a decrease in the C? F bond length (by ≈0.7 Å). The adiabatic component was not observed in the experimental TPE spectrum. However, on comparing this spectrum with an ab initio/Franck–Condon simulation of this band, using results from high‐level ab initio calculations, the structure associated with the vibrational components could be assigned. This led to alignment of the experimental TPE spectrum and the computed Franck–Condon envelope, and a determination of the first adiabatic ionization energy of CF₂ as (11.362±0.005) eV. From the assignment of the vibrational structure, values were obtained for the harmonic and fundamental frequencies of the symmetric stretching mode (ν₁′) and symmetric bending mode (ν₂′) in CF₂⁺ (X?²A₁).     

New functionalised silicas for highly selective cation exchange SPE purification in medicinal chemistry

Functionalised silicas 2 and 3 are effective for the cation exchange SPE purification of basic molecules containing acid-sensitive functionalities, the selective separations of mixtures of basic compounds and accelerated reaction work-ups/product isolations.     

Semiochemicals related to the aphid Cinara pilicornis and its host, Picea abies: a method to assign nepetalactone diastereomers

Volatiles released by seedlings of Norway spruce infested with the aphid Cinara pilicornis were analyzed using SPME-GC-MS. Among the stress-induced compounds released by the host plant, citronellol, cis-trans-nepetalactone and cis-trans-nepetalactol was found. These compounds originated from the aphids and they were assumed to be pheromone components for this aphid species. To determine the relative stereochemistry of the nepetalactone, a diagnostic method was developed. The method was based on multivariate analysis of tabulated relative intensities of mass fragments of the four nepetalactone diastereomers. In the practical method described, a few pairs of fragments in the mass spectra were compared and, in combination with the Kovat's index, were used to unambiguously identify the relative stereochemistry of the nepetalactone.     

Benzoboroxoles as efficient glycopyranoside-binding agents in physiological conditions: structure and selectivity of complex formation

In contrast to normal boronic acids, o-hydroxymethyl phenylboronic acid (benzoboroxole) has the capability of complexing glycopyranosides efficiently in neutral water. The measurement of association constants with a panel of model hexopyranosides indicates that the preferred mode of binding is through a cis-3,4-diol, such as that found in galactopyranosides, and mass spectrometric studies support a 1:1 binding stoichiometry. The complexation of glucopyranosides is weaker, and they are bound through their 4,6-diol unit. Although several factors may explain the exceptional carbohydrate-binding behavior of this class of hemiboronic acids, the relatively high Lewis acidity of benzoboroxoles is a likely contributing factor along with subtle factors such as intramolecular hydrogen bonds with other hydroxyl groups in the resulting anionic complex. These results with hexopyranosides suggest that biologically relevant cell-surface oligosaccharides could be targeted in water using oligomeric benzoboroxole receptors.     

Octahedral tilting in MM'X4 metal-oxide organic layer structures

Three metal-oxide organic frameworks have been synthesized and characterized: vanadium 1,4-benzenedicarboxylate, V2O2F0.6(OH)1.4(BDC).0.4H 2O (1); indium 1,4-benzenedicarboxylate, In 2F2.2(OH)1.8(BDC).1.6H2O (2); and aluminum 1,4-benzenedicarboxylate Al2F3(OH)(BDC) (3). The three-dimensional structures of 1, 2, and 3 have the same framework topology as the previously reported vanadium (III) 1,4-benzenedicarboxylate, VIII2(OH)2F2(BDC). The frameworks consist of inorganic layers constructed from corner sharing ML 6 octahedra (M=V, In, Al and L=OH, F) linked by BDC ligands. The structures are related to a general class of perovskite-related layer structures with composition MM'X4. The layers show characteristic distortions that can be related to tilting of the ML 6 octahedra. In particular the structure of 1 consists of O-V distances that strongly alternate along the b axis. The electronic consequences of this distortion then create a tilting of the 1,4-benzenedicarboxylate ligand about the a axis. Crystal data: 1, orthorhombic, space group Pmna, a=7.101(2) A, b=3.8416(11) A, c=20.570(6) A; 2, orthorhombic, space group Cmcm, a=7.490(4) A, b=21.803(1) A, c=8.154(4) A; 3, monoclinic, space group P2(1)/m, a=10.7569(8) A, b=6.7615(3) A, c=7.1291(3) A, beta=76.02(1) degrees.     

Polyfunctional methodology for improved DFT thermochemical predictions

Statistical error distributions for enthalpies of formation as predicted by 18 different density functionals have been analyzed using a test set of 675 molecules. Systematic errors, dependent on the number of valence electrons, have been identified for some functionals. A simple empirical correction makes a significant improvement in the prediction error for these single functionals. Linear combinations of enthalpy estimates from different density functionals are identified that exploit the error correlations among the functionals and allow for further improvements in the accuracy of thermodynamic predictions. A good compromise between accuracy and computational efforts is achieved by the BLUE (best linear unbiased estimator) combination of three functionals, B3LYP, BLYP, and VSXC (polyfunctional 3 or PF3). The PF3 method has a mean absolute deviation (MAD) from experiment of 2.4 kcal/mol on the G3 set of 271 molecules. This can be compared to the MAD of 4.9 kcal/mol for B3LYP and 1.2 kcal/mol for the more costly G3 method. On the larger set of 675 molecules, the MAD for PF3 is 3.0 kcal/mol. Opportunities for further improvements in the accuracy of this method are discussed.