Un-diversifying during crises: Is it a good idea?

Computational Management Science - High levels of correlation among financial assets and extreme losses are typical during crises. In such situations, investing in few assets might be a better...     

A variable fixing version of the two-block nonlinear constrained Gauss–Seidel algorithm for \ell _1-regularized least-squares

The problem of finding sparse solutions to underdetermined systems of linear equations is very common in many fields as e.g. signal/image processing and statistics. A standard tool for dealing with sparse recovery is the \(\ell _1\) -regularized least-squares approach that has recently attracted the attention of many researchers. In this paper, we describe a new version of the two-block nonlinear constrained Gauss–Seidel algorithm for solving \(\ell _1\) -regularized least-squares that at each step of the iteration process fixes some variables to zero according to a simple active-set strategy. We prove the global convergence of the new algorithm and we show its efficiency reporting the results of some preliminary numerical experiments.     

A stereoselective route to 6-substituted pyrrolo-1,5-benzoxazepinones and their analogues

We developed a novel and convenient stereoselective path for the preparation of pyrrolo-1,5-benzoxazepinones (PBOs). This innovative route envisaged the employment of (−)-menthol as convenient chiral auxiliary and a key S_NAr for the stereoselective preparation of a tertiary aryl–alkyl ether. As a further advancement, we exploited this newly conceived synthetic route for the preparation of 2-substituted PBO analogues to either undergo biological evaluation themselves or give access to a variety of further functionalization options.     

Photophysical Properties and Conformational Effects on the Circular Dichroism of an Azobenzene–Cyclodextrin [1]Rotaxane and Its Molecular Components

The photophysical properties of a multicomponent [1]rotaxane bearing a β‐cyclodextrin ring covalently connected to an axle comprising an azobenzene photoisomerisable moiety and a naphthalimide‐type fluorescent stopper are investigated by a combined experimental and computational study. The absorption and fluorescence spectra, and particularly the induced circular dichroism (ICD) signal, are determined. The latter shows a sign relation that cannot be rationalised in terms of the simple general rules commonly employed to analyse the ICD spectra of achiral guests encircled by chiral hosts. To assist the interpretation of experimental results, DFT and time‐dependent (TD) DFT calculations are performed to explore the availability of low‐energy conformations and to model their spectroscopic response. Molecular dynamics simulations performed in water show the interconversion of a number of conformers, the contribution of which to the ICD signal is in agreement with the observation.     

Spectroscopic and Electrochemical Properties of Catenanes Containing the 2,7-Diazapyrenium Unit

Abstract

The spectroscopic and electrochemical properties of two cyclophanes containing one and, respectively, two 2,7-diazapyrenium electron-acceptor units, and of their [2]catenanes with macrocycles containing two dioxybenzene or dioxynaphthalene electrondonor units have been investigated. The absorption spectra of the catenanes show weak and broad bands in the visible region, assigned to charge-transfer (CT) interactions. The very strong and structured fluorescence (298 K) and the structured fluorescence and phosphorescence (77 K) of the diazapyrenium unit are maintained in the two cyclophanes, but they are no longer present in the [2]catenanes, presumably because of a quenching process caused by the lower energy CT excited states. Each diazapyrenium unit undergoes two distinct reduction processes - only the first one of which is fully reversible - that are hardly affected at all when the diazapyrenium units are incorporated in a cyclophane. In the [2]catenanes, the CT interaction displaces the reduction processes of the diazapyrenium units toward more negative potentials. The results obtained for the diazapyrenium and previously investigated 4,4′-bipyridinium salts, selected cyclophane derivatives, and some [2]catenanes obtained by interlocking the cyclophanes with macrocycles containing two dioxyaromatic electron-donor units are compared and discussed.     

Capturing Linear Intermediates and C-Terminal Variants during Maturation of the Thiopeptide GE2270

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Identification of thuridillin-related aldehydes from Mediterranean sacoglossan mollusk Thuridilla hopei

The re-investigation of the Mediterranean opisthobranch Thuridilla hopei resulted in the isolation and chemical characterization of three novel nor-diterpene aldehydes, nor-thuridillonals 2–4, structurally related to co-occurring already reported thuridillins. Analogous with the thuridillins, the new molecules were thought to derive from the same dietary precursor epoxylactone 1.     

Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge

As part of the SAMPL4 blind challenge, filtered AutoDock Vina ligand docking predictions and large scale binding energy distribution analysis method binding free energy calculations have been applied to the virtual screening of a focused library of candidate binders to the LEDGF site of the HIV integrase protein. The computational protocol leveraged docking and high level atomistic models to improve enrichment. The enrichment factor of our blind predictions ranked best among all of the computational submissions, and second best overall. This work represents to our knowledge the first example of the application of an all-atom physics-based binding free energy model to large scale virtual screening. A total of 285 parallel Hamiltonian replica exchange molecular dynamics absolute protein-ligand binding free energy simulations were conducted starting from docked poses. The setup of the simulations was fully automated, calculations were distributed on multiple computing resources and were completed in a 6-weeks period. The accuracy of the docked poses and the inclusion of intramolecular strain and entropic losses in the binding free energy estimates were the major factors behind the success of the method. Lack of sufficient time and computing resources to investigate additional protonation states of the ligands was a major cause of mispredictions. The experiment demonstrated the applicability of binding free energy modeling to improve hit rates in challenging virtual screening of focused ligand libraries during lead optimization.     

Quark and gluon tagging at the LHC

Being able to distinguish light-quark jets from gluon jets on an event-by-event basis could significantly enhance the reach for many new physics searches at the Large Hadron Collider. Through an exhaustive search of existing and novel jet substructure observables, we find that a multivariate approach can filter out over 95% of the gluon jets while keeping more than half of the light-quark jets. Moreover, a combination of two simple variables, the charge track multiplicity and the p(T)-weighted linear radial moment (girth), can achieve similar results. Our study is only Monte Carlo based, so other observables constructed using different jet sizes and parameters are used to highlight areas that deserve further theoretical and experimental scrutiny. Additional information, including distributions of around 10,000 variables, can be found at http://jets.physics.harvard.edu/qvg/.