Molecular dynamics simulations of the mononuclear zinc-beta-lactamase from Bacillus cereus complexed with benzylpenicillin and a quantum chemical study of the reaction mechanism

Herein, we present results from MD simulations of the Michaelis complex formed between the B. cereus zinc-beta-lactamase enzyme and benzylpenicillin. The structural and dynamical effects induced by substrate-binding, the specific role of the conserved residues, and the near attack conformers of the Michaelis complex are discussed. Quantum chemical methods (HF/6-31G* and B3LYP/6-31G*) are also applied to study the hydrolysis reaction of N-methylazetidinone catalyzed by a monozinc system consisting of the side chains of the histidine residues (His86, His88, and His149) complexed with Zn-OH and the side chains of Asp90 and His210. From this model system, we built molecular-mechanics representations of the prereactive complex and transition state configurations docked into the active site. Linear-scaling semiempirical calculations coupled with a continuum solvent model were then performed on these static models. We propose that the experimental rate data for the B. cereus enzyme is compatible with a one-step mechanism for the hydrolysis of beta-lactam substrates in which His210 acts as a proton donor.     

Enzyme catalysis in organic solvents: a promising field for optical biosensing

The ability of enzymes to work in non-aqueous media offers new and almost unexploited possibilities for the development of new optical biosensors. The advantages of performing biocatalytic reactions in non-aqueous media are discussed in relation to their possible application in optical biosensor design. Attention is focused on the factors that influence enzymatic catalysis in organic solvents, including the role of enzyme-associated water, criteria for solvent selection and the alteration of enzyme specificity. Recent examples of relevant applications and future prospects of organic-phase optical biosensing are discussed.     

Extraction of the (C4H9)4N+Co(II)SCN− ion-pair in chloroform and in isoamyl alcohol: Spectrophotometric determination of cobalt

When excesses of ammonium thiocyanate and tetrabutylammonium chloride are added to a cobalt(II) solution, a water-insoluble ion-pair is formed; this compound is soluble in chloroform, isoamyl alcohol, and other solvents. The variables which affect the extractions by these two solvents are studied in order to obtain the optimal conditions and two alternative extraction procedures are proposed. Thus, the separation of cobalt as a previous step for its spectrophotometric determination is studied.     

Sections and projections of nested convex bodies

Aequationes mathematicae - One of the most important problems in Geometric Tomography is to establish properties of a given convex body if we know some properties over its sections or its...     

Examining the balance between efficiency and resilience in closed-loop supply chains

Central European Journal of Operations Research - We study a hybrid system where the demand of customers can be satisfied by both manufacturing new products and remanufacturing used products. To...     

The crystal structure of eudesma-4(15),7(11)-dien-8α, 12-olide: a sesquiterpene lactone fromTrattinickia rhoifolia Willd

The title compound, formula C₁₅H₂₀O₂, is orthorhombic, P2₁2₁2₁ witha=8.747(2),b=12.025(3),c=12.554(3)Å,Z=4, andD _m =1.32(2)g/ml. The structural analysis shows that the compound corresponds to eudesma-4(15),7(11)-dien-8,12-olide, a sesquiterpene lactone previously isolated fromAster umbellatus but whose crystal structure was unknown.     

Lines of curvature near umbilical points on surfaces immersed in R4

LetM be a compact orientable surface,I:M R⁴ an immersion of classC ^r and a normal unitary smooth vector field. We prove that in the space of pairs (I, ) the family of pairs all whose umbilical points are Darbouxian is generic.     

q-Sigma-algebra generated by balls

The q--algebra, i.e., the system of sets closed under complementation, countable disjoint unions, and containing the empty set, generated by the system of open balls coincides with the -field of Borel sets inR sun forn=1,2, and 3. A first step to extend the proof forn=4, 5, 6, and 7 is indicated.     

Encapsulation of magnetite in vesicles

The encapsulation of fine magnetite particles of 10 nm size and marker ANS within asolectin vesicles has been made by sonication of the mixture in water. For the proof of encapsulation of magnetite in vesicles the electron microscope and spectrofluoriphotometer technique were used. The theory for the calculation of the magnetic force acting on the system consisted of non-capsulated magnetic particles dispersed in water and magnetic vesicles was developed.This work was supported by the Slovak Academy of Sciences within the framework of Project GAV No. 1361.     

On the critical regimes in the theory of randomly forced magnetohydrodynamic turbulence

In this paper large-scale properties of developed magnetohydrodynamic turbulence have been investigated by using double expansion method in the frame of quantum field renormalization group. It has been shown that universal kinetic scaling regime exists, but the double expansion in general leads to qualitatively different results than those provided by the usual -expansion treatment.This work was supported by Slovak Grant Agency for Science.