Computer simulation of partitioning of ten pentapeptides Ace-WLXLL at the cyclohexane/water and phospholipid/water interfaces

Background  

Peptide-membrane interactions play a key role in the binding, partitioning and folding of membrane proteins, the activity of antimicrobial and fusion peptides, and a number of other processes. To gain a better understanding of the thermodynamics of such interactions, White and Wimley created an interfacial hydrophobicity scale based of the transfer free energy from water to octanol or lipid bilayers of a series of synthetic peptapeptides (Ace-WLXLL, with X being any of the twenty natural amino acids) (White and Wimley (1996) Nat. Struct. Biol. 3, 842–848). In this study, we performed molecular dynamics simulations of a representative set of ten of these peptides (X = D, K, R, N, A, T, S, I, F and W) in two membrane mimetic interfaces: water-cyclohexane (10 ns) and a fully solvated dioleoylphosphatidylcholine (DOPC) bilayer (50 ns) using both constant pressure and constant area ensembles. We focus on partitioning of the ten peptides at the cyclohexane/water and lipid/water interfaces.     

Repeller-Induced dissociation of alkyl alcohols in thermospray mass spectrometry

Six alkyl alcohols were studied using thermospray mass Spectrometry. Whereas the dominant ion in the spectrum up to a repeller potential of 120 V was [M + NH₄]⁺, above that potential [M + H]⁺ and fragment ions appeared. The fragments observed were largely due to hydrogen release from alkyl ions ([C_nH_2n+1]⁺ – H2 → [C_nH_2n-1]⁺) and loss of water or some other stable molecule from the same species. The results are compared with those from ionization of the same alcohols under electron impact and photoionization conditions and with results obtained for methanol under thermospray conditions.     

Dissociative multiphoton ionization of NO2 studied by time-resolved imaging

We have studied dissociative multiphoton ionization of NO2 by time-resolved velocity map imaging in a two-color pump-probe experiment using the 400 and 266 nm harmonics of a regeneratively amplified titanium-sapphire laser. We observe that most of the ion signal appears as NO+ with approximately 0.28 eV peak kinetic energy. Approximately 600 fs period oscillations indicative of wave packet motion are also observed in the NO+ decay. We attribute the signal to two competitive mechanisms. The first involving three-photon 400 nm absorption followed by dissociative ionization of the pumped state by a subsequent 266 nm photon. The second involving one-photon 400 nm absorption to the 2B2 state of NO2 followed by two-photon dissociative ionization at 266 nm. This interpretation is derived from the observation that the total NO+ ion signal exhibits biexponential decay, 0.72 exp(-t/90+/-10)+0.28 exp(-t/4000+/-400), where t is the 266 nm delay in femtoseconds. The fast decay of the majority of the NO+ signal suggests a direct dissociation via the bending mode of the pumped state. .     

Glucose biosensors based on the immobilization of copper oxide and glucose oxidase within a carbon paste matrix

The performance of amperometric glucose biosensors based on the dispersion of glucose oxidase (GOx) and copper oxide within a classical carbon (graphite) paste composite is reported in this work. Copper oxide promotes an excellent electrocatalytic activity towards the oxidation and reduction of hydrogen peroxide, allowing a large decrease in the oxidation and reduction overpotentials, as well as an important enhancement of the corresponding currents. Therefore, it is possible to perform the glucose biosensing at low potentials where there is no interference even in large excess of ascorbic acid, uric acid or acetaminophen. The influence of the copper oxide and glucose oxidase content in the paste on the analytical performance of the bioelectrode is discussed. The resulting biosensor shows a fast response, a linear relationship between current and glucose concentration up to 1.35 × 10⁻² M (2.43 g L⁻¹) and a detection limit of 2.0 × 10⁻⁵ M. The effect of the presence of the enzyme in the composite material on the dispersion of the copper oxide particles is also discussed.     

Development,validation and application of a 96-well enzymatic assay based on LC-ESI-MS/MS quantification for the screening of selective inhibitors against Mycobacterium tuberculosis purine nucleoside phosphorylase

Mycobacterium tuberculosis (Mtb) purine nucleoside phosphorylase (PNP, EC 2.4.2.1) has been identified as a target for the development of specific inhibitors with potential antimycobacterial activity. We hereby described the development and validation of a new 96-well LC-ESI-MS/MS method to assess the inhibition activity of nucleoside analogues towards MtbPNP and the human PNP (HsPNP). Enzyme activity was determined by monitoring the phosphorolysis of inosine (Ino) to hypoxanthine (Hpx). The enzymatic assay (v = 0.5 mL, enzyme<0.2 μg/well, T = 37 °C) was performed with an overall time of about 15 min/plate for sample processing and 2 min/sample for LC-MS analysis. Validation of the quantification method met the criteria of the CDER guidance of FDA. Kinetic parameters were in agreement with those reported in literature (HsPNP K_M = 0.150 ± 0.020 mM vs 0.133 ± 0.015 mM; MtbPNP K_M = 0.060 ± 0.009 mM vs 0.040 ± 0.003 mM for Ino), thus demonstrating the reliability of the newly developed enzymatic assay. Preliminary inhibition assays confirmed the effects reported for Acyclovir (Acv) and Formycin A (FA) against HsPNP and MtbPNP. The validated enzymatic assay was applied to the evaluation of a set of 8-halo-, 8-amino-, 8-O-alkyl-substituted purine ribonucleosides synthesized on purpose as potential inhibitors against MtbPNP. The assayed 8-substituted ribonucleosides did not exert a significant inhibitory effect against the tested enzymes up to 1 mM.     

Methodological aspects about in vitro evaluation of antioxidant properties

Several of the most commonly used methods for in vitro determination of antioxidant capacity are reviewed in the present paper. The chemical principles of methods based either on biological oxidants (peroxyl radical, superoxide radical anion, hydrogen peroxide, hydroxyl radical, hypochlorous acid, singlet oxygen, nitric oxide radical, and peroxynitrite) or on non-biological assays (scavenging of 2,2′-azinobis-(3-ethylbenzothiazoline-6-sulphonate) radical cation (TEAC assay), scavenging of 2,2-diphenyl-1-picrylhydrazyl radical (DPPH assay), ferric reducing antioxidant power (FRAP assay), Folin-Ciocalteu reducing capacity (FC assay), electrochemical total reducing capacity) are outlined and critically discussed. The scope of application, the advantages and shortcomings of each method are also highlighted.     

Proton-transfer mediated quenching of pyrene/indole charge-transfer states in isooctane solutions

The fluorescence quenching of pyrene (Py) by a series of N-methyl and N-H substituted indoles was studied in isooctane at 298 K. The fluorescence quenching rate constants were evaluated by mean of steady-state and time-resolved measurements. In all cases, the quenching process involves a charge-transfer (CT) mechanism. The I(o)/I and tau(o)/tau Stern-Volmer plots obtained for the N-H indoles show a very unusual upward deviation with increasing concentration of the quenchers. This behavior is attributed to the self-quenching of the CT intermediates by the free indoles in solution. The efficiency of quenching of the polyaromatic by the N-H indoles increases abruptly in the presence of small amount of added pyridine (or propanol). A detailed analysis of the experimental data obtained in the presence of pyridine provides unambiguous evidence that the self-quenching process involves proton transfer from the CT states to indoles.     

Detection of hydrophobic microdomains in anionic polyelectrolytes with tris-(4,7-diphenyl-1,10-phenanthroline)3Cr(III)

This paper describes the changes in the luminescent properties of the tris-(4,7-diphenyl-1,10-phenanthroline)(3)Cr(III), [Cr(dip)(3)](3+) complex in an aqueous solution of three polyelectrolytes containing cyclohexyl, phenyl or 1-naphthyl groups in the side chain. When the polyelectrolytes form hydrophobic microdomains the luminescence of [Cr(dip)(3)](3+) is affected. The luminescence increases in the presence of cyclohexyl groups in the side chains, but decreases in the presence of phenyl and naphthyl groups (in that order). This fact can be explained in terms of a reductive quenching mechanism between the complex and the aromatic groups. Indeed, experiments performed with the complex and the alcohols corresponding to the functional groups, i.e., cyclohexanol, phenol, and naphthol, also show the same behavior, confirming the interaction with the functional groups and not other components of the polyelectrolyte. The luminescent properties of the [Cr(dip)(3)](3+) complex allow the detection of hydrophobic microdomains arising from the host-guest interaction. Moreover, the complex is able to distinguish between a nonaromatic hydrophobic microdomain and an aromatic one.     

Synthesis of fluorinated acyclic nucleoside phosphonates with 5-azacytosine base moiety

With respect to the strong antiviral activity of (S)-1-[3-hydroxy-2-(phosphonomethoxy)propyl]-5-azacytosine various types of its side chain fluorinated analogues were prepared. The title compound, (S)-1-[3-fluoro-2-(phosphonomethoxy)propyl]-5-azacytosine (FPMP-5-azaC) was synthesised by the condensation reaction of (S)-2-[(diisopropoxyphosphoryl)methoxy)-3-fluoropropyl p-toluenesulfonate with a sodium salt of 5-azacytosine followed by separation of appropriate N¹ and O² regioisomers and ester hydrolysis. Transformations of FPMP-5-azaC to its 5,6-dihydro-5-azacytosine counterpart, amino acid phosphoramidate prodrugs and systems with an annelated five-membered imidazole ring, i.e. imidazo [1,2-a][1,3,5]triazine derivatives were also carried out. 1-(2-Phosphonomethoxy-3,3,3-trifluoropropyl)-5-azacytosine was prepared from 5-azacytosine and trifluoromethyloxirane to form 1-(3,3,3-trifluoro-2-hydroxypropyl)-5-azacytosine which was treated with diisopropyl bromomethanephosphonate followed by deprotection of esters. Antiviral activity of all newly prepared compounds was studied. FPMP-5-azaC diisopropyl ester inhibited the replication of herpes viruses with EC₅₀ values that were about three times higher than that of the reference anti-HCMV drug ganciclovir without displaying cytotoxicity.     

Analysis of thermo-physical properties of materials suitable for thermal stabilization of superconducting tapes for high-voltage superconducting fault current limiters

Journal of Thermal Analysis and Calorimetry - High-temperature superconducting coated conductors (CC) are attractive materials for high-voltage resistive fault current limiters. Commercially...