Reaction of the carbonate radical with substituted anilines

Rate constants for the reaction of carbonate radical with aniline and some parasubstituted anilines have been determined by the flash photolysis technique. Using σ⁺ para values the rate constants at pH 8.5 correlate very well with the Hammett equation yielding ρ= − 1. The carbonate radical oxidises aniline giving the anilino radical. The products so formed have been identified through studies under conditions of continuous irradiation.     

Evaluation of the complexity of charge recombination kinetics in photosynthetic bacteria

Abstract Improvements in instrumentation and methodology have allowed us to collect data of high signal to noise and reliability on the kinetics of recovery of both light-induced absorbance changes and ESR signals at 95 K. The results obtained by the two methods are identical and can not be fit with a single exponential curve. The decay kinetics can be fit well with three exponential components which represent 85, 9 and 6% of the total change with rate constants of 29 s⁻¹, 69 s⁻¹ and 2.3 s⁻¹, respectively. An interesting effect by molecular oxygen on the relaxation time of the donor cation radical was found by ESR measurements at low temperatures and higher microwave power. This interaction with oxygen could be blocked by addition of small amounts (e.g. 0.05%) of organic solvents such as ethanol. A variety of systems were examined including R. rubrum whole cells and chromatophores prepared from R. rubrum and Rps. sphaeroides. R. rubrum chromatophore samples were examined at high and low light intensities, at pH values from 6 to 10, in the presence and absence of air and after equilibration in D₂O media. In all cases, the same decay kinetics were observed. It seems possible that the observed complex decay may be a characteristic of phototraps of all photosynthetic material and reflect fundamental structural and functional features yet to be uncovered.     

On the role of collective and local molecular fluctuations in the relaxation of proton intrapair dipolar order in nematic 5CB

We investigate the role that local motions and slow cooperative fluctuations have on the relaxation of the intrapair dipolar order in the nematic 5CB. With this purpose we present a theoretical and experimental systematic study which allow us to quantify the contribution from each type of molecular fluctuation to the intrapair dipolar order relaxation time, T(1D). The experimental work includes measurements of Zeeman and intrapair dipolar order relaxation times (T(1Z) and T(1D)) as a function of temperature at conventional NMR frequencies, in three complementary samples: normal and chain deuterated 4-n-pentyl-4(')-cyanobiphenyl (5CB and 5CB(d11)) and a mixture of normal 5CB and fully deuterated 4-n-pentyl-4'-cyanobiphenyl (5CB(d19)), 50% in weight. Additionally we perform T(1Z) field-cycling Larmor frequency-dependent measurements to obtain the spectral density of the cooperative fluctuations. The obtained results are as follows. (a) The cooperative molecular fluctuations have a strong relative weight in the relaxation of the intrapair dipolar order state, even at Larmor frequencies in the range of conventional NMR. (b) Alkyl chain rotations are an important relaxation mechanism of the intrapair dipolar order at megahertz frequencies. (c) Intermolecular fluctuations mediated by translational self-diffusion of the molecules is not an efficient mechanism of relaxation of the intrapair dipolar order.     

A direct analysis of the dispersion equation in birefringent optical fibres

Weakly-guiding, anisotropic step-index fibres are considered in the case where the permittivity tensor is everywhere diagonalized in the axes of the fibre. A method is shown which allows one to derive a mode and its dispersion equation with arbitrary accuracy in terms of the powers of the weak-guiding parameter. The method is applied to the derivation of the leakage loss of they-polarized LP₀₁ mode when _x>_y.     

A theoretical examination of the acid-catalyzed and noncatalyzed ring-opening reaction of an oxirane by nucleophilic addition of acetate. Implications to epoxide hydrolases

Ab initio and density functional calculations have been performed to gain a better understanding of the epoxide ring-opening reaction catalyzed by epoxide hydrolase. The S(N)2 reaction of acetate with 1S,2S-trans-2-methylstyrene oxide to provide the corresponding diol acetate ester was studied with and without general-acid catalysis. MP2 and DFT (B3LYP) calculations predict, for the noncatalyzed reaction, a central barrier of approximately 20-21 kcal/mol separating the reactants from products depending on which carbon center in the epoxide is undergoing attack. From these gas-phase reactions the immediate alkoxide products are not energetically far below their associated transition states such that the reaction is predicted to be endothermic. Inclusion of aqueous solvation effects via a polarizable continuum model predicts the activation barrier to increase by almost 10 kcal/mol due to the solvation of the acetate ion nucleophile. The activation barrier for the epoxide ring-opening reaction is reduced to approximately 10 kcal/mol when phenol, as the general-acid catalyst, is included in the gas-phase calculations. This is due to the immediate product being the neutral ester rather than the corresponding alkoxide. The transition state in the general-acid-catalyzed reaction is earlier than that for the noncatalyzed reaction and the reaction is highly exothermic. Molecular mechanics calculations of 1S,2S-trans-2-methylstyrene oxide in the active site of murine epoxide hydrolase show two possible binding conformations. Both conformers have the epoxide oxygen forming hydrogen bonds with the acidic hydrogens of the catalytic tyrosines (Tyr381 and Tyr465). These two conformations likely lead to different products since the nucleophile (Asp333-CO(2)(-)) is positioned to react with either carbon center in the epoxide.     

MoSe2 and WSe2 nanotubes and related structures

MoSe2 and WSe2 nanotubes are obtained by the reduction of the corresponding triselenides in hydrogen or by the decomposition of the ammonium selenometallates in a hydrogen atmosphere.     

In vitro high throughput screening of compounds for favorable metabolic properties in drug discovery

Drug metabolism can have profound effects on the pharmacological and toxicological profile of therapeutic agents. In the pharmaceutical industry, many in vitro techniques are in place or under development to screen and optimize compounds for favorable metabolic properties in the drug discovery phase. These in vitro technologies are meant to address important issues such as: (1) is the compound a potent inhibitor of drug metabolising enzymes (DMEs)? (2) does the compound induce the expression of DMEs? (3) how labile is the compound to metabolic degradation? (4) which specific enzyme(s) is responsible for the compound's biotransformation? and (5) to which metabolites is the compound metabolized? Answers to these questions provide a basis for judging whether a compound is likely to have acceptable pharmacokinetic properties in vivo. To address these issues on the increasing number of compounds inundating the drug discovery programs, high throughput assays are essential. A combination of biochemical advances in the understanding of the function and regulation of DMEs (in particular, cytochromes P450, CYPs) and automated analytical technologies are revolutionizing drug metabolism research. Automated LC-MS based metabolic stability, fluorescence, radiometric and LC-MS based CYP inhibition assays are now in routine use. Automatible models for studying CYP induction based on enzyme activity, quantitative RT-PCR and reporter gene systems are being developed. We will review the utility and limitations of these HTS approaches and highlight on-going developments and emerging technologies to answer metabolism questions at the different stages of the drug discovery process.     

Analysis of steroids in environmental water samples using solid-phase extraction and ion-trap gas chromatography-mass spectrometry and gas chromatography-tandem mass spectrometry

This paper describes an improved method for the extraction and determination of three steroids, oestrone, 17beta-oestradiol, and the synthetic contraceptive steroid 17alpha-ethinyloestradiol in aqueous matrices. Samples of wastewater and environmental water were spiked with internal standards, comprising isotopically labelled analogues of the steroids to be determined. The samples were extracted using solid-phase extraction disks and the extracts were then derivatized to form tert.-butyldimethylsilyl derivatives. The derivatised steroids were determined in the final extracts by GC-MS or GC-MS-MS allowing an operational detection limit for each steroid in effluent samples of 1 ng l(-1).     

Replacement of the phosphorodiester linkages of RNA with guanidinium linkages: the solid-phase synthesis of ribonucleic guanidine

[reaction: see text] Replacement of the negatively charged phosphodiester linkages of RNA with positively charged guanidinium linkages provides the polycationic ribonucleic guanidine (RNG). RNG is anticipated to bind strongly to target DNA/RNA through the specific interactions of nucleobases and the attractive electrostatic interactions of backbones. Preparation of building blocks and the solid-phase synthesis of RNG are reported. Both trimeric and pentameric uridyl RNG have been synthesized.     

Density functional calculation of the electronegativity and other related properties of atoms and ions of the principal groups of the periodic table

The relation between the electronegativityχ of an atom or an ion (χ=??E(Z,N)/?N) and its finite difference (Mulliken like) counterpart has been studied for the elements of the groups IA to VIIA of the Periodic Table, using an approximate Density Functional Theory. Only the valence electrons are taken into account and the effect of the ionic core is simulated by a simple empty core pseudopotential. The first derivative ?χ/6N of the electronegativity has also been computed. The interest inχ and?χ/?N is illustrated by a simple model for the transfer of electronic charge in a molecule. Molecular electronegativities are then computed.