Structural aspects of antibody-antigen interaction revealed through small random peptide libraries

Summary Two small random peptide libraries, one composed of 4550 dodecapeptides and one of 8000 tripeptides, were synthesized in newly developed credit-card format miniPEPSCAN cards (miniPEPSCAN libraries). Each peptide was synthesized in a discrete well (455 peptides/card). The two miniPEPSCAN libraries were screened with three different monoclonal antibodies (Mabs). Two other random peptide libraries, expressed on the wall of bacteria (recombinant libraries) and composed of 10⁷ hexa- and octapeptides, were screened with the same three Mabs. The aim of this study was to compare the amino acid sequence of peptides selected from small and large pools of random peptides and, in this way, investigate the potential of small random peptide libraries. The screening of the two miniPEPSCAN libraries resulted in the identification of a surprisingly large number of antibody-binding peptides, while the screening of the large recombinant libraries, using the same Mabs, resulted in the identification of only a small number of peptides. The large number of peptides derived from the small random peptide libraries allowed the determination of consensus sequences. These consensus sequences could be related to small linear and nonlinear parts of the respective epitopes. The small number of peptides derived from the large random peptide libraries could only be related to linear epitopes that were previously mapped using small libraries of overlapping peptides covering the antigenic protein. Thus, with respect to the cost and speed of identifying peptides that resemble linear and nonlinear parts of epitopes, small diversity libraries based on synthetic peptides appear to be superior to large diversity libraries based on expression systems.Abbreviations ABTS 2,2-azino-di-3-ethylbenzthiazoline sulfonate - EGF epidermal growth factor - Mab monoclonal antibody - OD_ccd optical density obtained using CCD camera - RAMPO rabbit-antimouse peroxidase - SDS sodium dodecylsulfate - TGEV transmissible gastroenteritis virus     

Production of fast evaporation residues by the reaction20Ne+208Pb at projectile energies of 8.6, 11.4 and 14.9 A.MeV

Velocity distributions and production cross sections of evaporation residues have been measured in the reaction²⁰Ne+²⁰⁸Pb at projectile energies of 8.6, 11.4, 14.9 A.MeV. Essential deviations from statistical model of deexcitation have been observed. Monte Carlo simulations involving emission of non-equilibrium particles have been used in order to reproduce experimental velocity, charge and mass distributions of evaporation residues and to estimate indirectly multiplicities of pre-equilibrium particles. Communicated by V. Metag     

Balancing domain decomposition for problems with large jumps in coefficients

The Balancing Domain Decomposition algorithm uses in each iteration solution of local problems on the subdomains coupled with a coarse problem that is used to propagate the error globally and to guarantee that the possibly singular local problems are consistent. The abstract theory introduced recently by the first-named author is used to develop condition number bounds for conforming linear elements in two and three dimensions. The bounds are independent of arbitrary coefficient jumps between subdomains and of the number of subdomains, and grow only as the squared logarithm of the mesh size . Computational experiments for two- and three-dimensional problems confirm the theory.

     

Influence of a background gas on expanding plasma clots

An expansion of finite plasma clots into the background neutral gas is studied numerically. The presented model includes the quasineutrality violation as well as the interpenetration of plasma and neutral gas at the boundary of the plasma. We estimate the region of plasma parameters where the model is correct. Space distributions of main plasma parameters, cooling of electrons and the process of inter-penetration of the plasma and the neutral gas are analysed as well as an empiric formula for electron temperature is found. Finally, it is shown that the most intensive plasma-gas inter-penetration occurs in the case where the initial plasma and gas densities are the same.     

Whitehead test modules

A (right -) module is said to be a Whitehead test module for projectivity (shortly: a p-test module) provided for each module , implies is projective. Dually, i-test modules are defined. For example, is a p-test abelian group iff each Whitehead group is free. Our first main result says that if is a right hereditary non-right perfect ring, then the existence of p-test modules is independent of ZFC + GCH. On the other hand, for any ring , there is a proper class of i-test modules. Dually, there is a proper class of p-test modules over any right perfect ring.

A non-semisimple ring is said to be fully saturated (-saturated) provided that all non-projective (-generated non-projective) modules are i-test. We show that classification of saturated rings can be reduced to the indecomposable ones. Indecomposable 1-saturated rings fall into two classes: type I, where all simple modules are isomorphic, and type II, the others. Our second main result gives a complete characterization of rings of type II as certain generalized upper triangular matrix rings, . The four parameters involved here are skew-fields and , and natural numbers . For rings of type I, we have several partial results: e.g. using a generalization of Bongartz Lemma, we show that it is consistent that each fully saturated ring of type I is a full matrix ring over a local quasi-Frobenius ring. In several recent papers, our results have been applied to Tilting Theory and to the Theory of -modules.

     

Infinite products of finite simple groups

We classify the sequences of finite simple nonabelian groups such that has uncountable cofinality.

     

Hyperfine interactions in icosahedral quasicrystals: a Mössbauer study

Icosahedral Al₆₅Cu₂₀Fe₁₅ and Al₄₀Cu_9.9Ge₂₅Mn₂₅ ⁵⁷Fe_0.1 quasicrystals are studied using⁵⁷Fe transmission Mössbauer experiments. The spectra are analyzed by distributions of electric-quadrupole interaction accounting for line asymmetries. Temperature dependences of the hyperfine parameters derived comprising average values ofP() distributions, corresponding standard deviations and center shifts are presented in a whole range from 8 to 300 K.     

Local order of icosahedral quasicrystals studied by Mössbauer spectroscopy

Thermodynamically stable Al-Cu-Fe and Fe-doped ferromagnetic Al-Cu-Ge-Mn icosahedral quasicrystals are studied by⁵⁷Fe transmission Mössbauer spectroscopy and X-ray diffraction experiments. Al₆₅Cu₂₀Fe₁₅ quasicrystalline alloy was subjected to a mechanical grinding (MG) for up to 800 hours in a ball mill. Presence of the amorphous phase which co-exists with the quasicrystalline one is revealed in the early stage of MG. Mössbauer measurements were performed on icosahedral Al₄₀Cu_10–x Ge₂₅Mn₂₅Fe _x quasicrystal (x0.1; 3) in a temperature range from 10 K to 548 K. It was found that a magnetic transition occurs at about 30 K which is far belowT _c reported in the literature. It is concluded that AlGeMn ferromagnet which is present in the samples does not affect the magnetic transition observed and the transition is an intrinsic property of the Al-Cu-Ge-Mn host alloy.Samples of icosahedral quasicrystals were kindly provided by Profs. A. Inoue, T. Masumoto and P. H. Shingu. Ball milling was performed in Kyoto University by a courtesy of Prof. P. H. Shingu. This work was supported by the project for priority areas on properties of quasicrystals (No. 01630003) from the Japanese Ministry of Education, Science and Culture.     

The acid-catalyzed and neutral solvolysis of benzoylphenyldiazomethane in water,aqueous t-butanol,and aqueous salt solutions

The acid-catalyzed and water-catalyzed solvolysis ofbenzoylphenyldiazomethane (1) have been studied in water and in t-butanol-water mixtures, the mole fraction of water (n_H2O) being varied from 0·75-1·00. Increasing t-butanol concentrations produce a pronounced decrease in both k_H⊕ and k_H2O. In the “water reaction” mutually compensatory changes of AH

and AS

are associated with the rate variations, with minima in AH

and AS

at about n_H2O = 0·95. In addition it was found that the magnitude of the salt effect of (n-Bu)₄NCl on the rate of hydrolysis of 1 in water at 25° is much larger than that of LiCl, NaCl and NaBr. Assuming that the rate of the “water reaction” is largely determined by water acidity, the data are suggestive for the existence of a relation between water acidity and solvent structural integrity in highly aqueous t-butanol-water solutions.     

Cosmic numbers and quantum theory

The cosmic numbers are considered, with emphasis on the relationN ². (HereN is the number of nucleons in the universe, and, its radius in atomic units.) This relation is interpreted in terms of a quantum mechanical model.