Pair interaction potentials with explicit polarization for molecular dynamics simulations of La(3+) in bulk water

Pair interaction potentials (IPs) were defined to describe the La(3+)-OH(2) interaction for simulating the La(3+) hydration in aqueous solution. La(3+)-OH(2) IPs are taken from the literature or parametrized essentially to reproduce ab initio calculations at the second-order Moller-Plesset level of theory on La(H(2)O)(8) (3+). The IPs are compared and used with molecular dynamics (MD) including explicit polarization, periodic boundary conditions of La(H(2)O)(216) (3+) boxes, and TIP3P water model modified to include explicit polarization. As expected, explicit polarization is crucial for obtaining both correct La-O distances (r(La-O)) and La(3+) coordination number (CN). Including polarization also modifies hydration structure up to the second hydration shell and decreases the number of water exchanges between the La(3+) first and second hydration shells. r(La-O) ((1))=2.52 A and CN((1))=9.02 are obtained here for our best potential. These values are in good agreement with experimental data. The tested La-O IPs appear to essentially account for the La-O short distance repulsion. As a consequence, we propose that most of the multibody effects are correctly described by the explicit polarization contributions even in the first La(3+) hydration shell. The MD simulation results are slightly improved by adding a-typically negative 1r(6)-slightly attractive contribution to the-typically exponential-repulsive term of the La-O IP. Mean residence times are obtained from MD simulations for a water molecule in the first (1082 ps) and second (7.6 ps) hydration shells of La(3+). The corresponding water exchange is a concerted mechanism: a water molecule leaving La(H(2)O)(9) (3+) in the opposite direction to the incoming water molecule. La(H(2)O)(9) (3+) has a slightly distorded "6+3" tricapped trigonal prism D(3h) structure, and the weakest bonding is in the medium triangle, where water exchanges take place.     

Structural and mechanistic studies of bis(phenolato)amine zinc(II) catalysts for the polymerization of epsilon-caprolactone

The syntheses, characterization, epsilon-caprolactone (CL) polymerization activity, and kinetics investigation of two zinc(II) bis(phenolato)amine complexes L2Zn2 are reported (L = methylamino-N,N-bis(2-methylene-4,6-di-tert-butylphenolato) and/or methylamino-N,N-bis(2-methylene-4-adamantyl-6-tert-butylphenolato)). X-ray crystallographic and 1H NMR studies, including NOESY and PGSE experiments, provided insight into the solid and solution state structures, respectively, as well as evidence for the catalytically active species responsible for the ring-opening polymerization of CL. Additionally, solution polymerizations and kinetic experiments involving (L1)2Zn2 in the presence of benzyl alcohol (BnOH) were performed to elucidate the influence of catalyst structure, solvent, and the concentration dependence of the catalytically active species, CL, and BnOH on the rate and control of poly-epsilon-caprolactone (PCL) formation. The structural, polymerization, and kinetic data support equilibria involving both mononuclear and dinuclear forms of (L1)2Zn2 as well as a monomer-activated route to PCL.     

Conformationally restricted (+)-cacospongionolide B analogues. Influence on secretory phospholipase A2 inhibition

A new approach to (+)-cacospongionolide was developed to access conformationally restricted variants of the natural product. The flexible aliphatic region between the decalin and side chain portion of the natural product was replaced with alkenyl and alkynyl linkers to probe the influence of structural rigidity in the inhibition of secretary phospholipase A2 (sPLA2). It was found that when the aliphatic section is replaced with a Z-olefin or an alkyne, sPLA2 inhibitory activity suffered relative to the natural product; however, an E-olefin-containing analogue led to an enhanced activity. These results suggest that preferred sPLA2 binding conformation of the natural product is similar to the geometry of the E-olefin-containing analogue.     

Langmuir and Langmuir-Blodgett monolayers of molecular tweezers and clips

Molecular clips and tweezers are able to selectively bind electron-deficient aromatic and aliphatic substrates. By means of pressure-area isotherms and Brewster angle microscopy (BAM), the self-association process and phase behavior of dimethylene-bridged molecular clips and tetramethylene-bridged molecular tweezers each substituted with two acetoxy groups as polar head groups were investigated. In a series of experiments, we observed that the molecular surface area of the clips and tweezers only depended on the skeletal structure and not on the polar groups. The measured areas agreed with the effective molecular diameters of the molecules if the aromatic side walls of the clips or tweezers were assumed to be aligned perpendicularly to the water surface. We compared the phase behavior of the pure molecular clips and tweezers with that of the host-guest complexes of these molecules, which were formed with 1,2,4,5-tetracyanobenzene (TCNB) as the guest molecule. For the clips with a central benzene (I) and naphthalene spacer unit (II), the complex formation with TCNB had no measurable influence on the phase diagrams of the films. We observed, however, a dramatic difference in the BAM images and pi-A isotherms between the pure molecular tweezers III and its complex with TCNB (TCNB@III). In addition to the pi-A isotherms, we used the surface potential (V)-area (A) isotherms to compare the pure tweezers III with the corresponding complex (TCNB@III). There was a strong difference in the maximum surface potential value for the pure tweezers (450 mV) and that for the complex (300 mV). In additional experiments, we prepared LB layers of such molecules, which were investigated by fluorescence spectroscopy. In comparison to the pure tweezers III, a luminescence emission of charge-transfer (CT) origin was observed for the host-guest complex (TCNB@III) fixed on the solid substrate. It turned out that the spectra were in good agreement with the results observed in chloroform solution.     

A low-cost, disposable card for rapid polymerase chain reaction

A low-cost, disposable card for rapid polymerase chain reaction (PCR) was developed in this work. Commercially available, adhesive-coated aluminum foils and polypropylene films were laminated with structured polycarbonate films to form microreactors in a card format. Ice valves [1] were employed to seal the reaction chambers during thermal cycling and a Peltier-based thermal cycler was configured for rapid thermal cycling and ice valve actuation. Numerical modeling was conducted to optimize the design of the PCR reactor and investigate the thermal gradient in the reaction chamber in the direction of sample thickness. The PCR reactor was experimentally characterized by using thin foil thermocouples and validated by a successful amplification of 10 copy of E. coli tuf gene in 27 min.     

On the regularity of products and intersections of complete intersections

This paper proves the formulae

for arbitrary monomial complete intersections and , and provides examples showing that these inequalities do not hold for general complete intersections.

     

Some 3-manifolds and 3-orbifolds with large fundamental group

We provide two new proofs of a theorem of Cooper, Long and Reid which asserts that, apart from an explicit finite list of exceptional manifolds, any compact orientable irreducible 3-manifold with non-empty boundary has large fundamental group. The first proof is direct and topological; the second is group-theoretic. These techniques are then applied to prove a string of results about (possibly closed) 3-orbifolds, which culminate in the following theorem. If is a knot in a compact orientable 3-manifold such that the complement of admits a complete finite-volume hyperbolic structure, then the orbifold obtained by assigning a singularity of order along has large fundamental group for infinitely many positive integers . We also obtain information about this set of values of . When is the 3-sphere, this has implications for the cyclic branched covers over the knot. In this case, we may also weaken the hypothesis that the complement of is hyperbolic to the assumption that is non-trivial.

     

Patterned burst-pulse vocalizations of the northern right whale dolphin, Lissodelphis borealis

Vocalizations from the northern right whale dolphin, Lissodelphis borealis, were recorded during a combined visual and acoustic shipboard survey of cetacean populations off the west coast of the United States. Seven of twenty single-species schools of L. borealis produced click and pulsed vocalizations. No whistles were detected during any of the encounters. Clicks associated with burst-pulse vocalizations were lower in frequency and shorter in duration than clicks associated with echolocation. All burst-pulse sounds were produced in a series containing 6-18 individual burst-pulses. These burst-pulse series were stereotyped and repeated. A total of eight unique burst-pulse series were detected. Variation in the temporal characteristics of like units compared across repeated series was less than variation among all burst-pulses. These stereotyped burst-pulse series may play a similar communicative role as do stereotyped whistles found in other delphinid species.     

Asymptotic behavior and Hamiltonian analysis of anti-de Sitter gravity coupled to scalar fields

We examine anti-de Sitter gravity minimally coupled to a self-interacting scalar field in D ? 4 dimensions when the mass of the scalar field is in the range . Here, l is the AdS radius, and is the Breitenlohner-Freedman mass. We show that even though the scalar field generically has a slow fall-off at infinity which back reacts on the metric so as to modify its standard asymptotic behavior, one can still formulate asymptotic conditions (i) that are anti-de Sitter invariant; and (ii) that allows the construction of well-defined and finite Hamiltonian generators for all elements of the anti-de Sitter algebra. This requires imposing a functional relationship on the coefficients a, b that control the two independent terms in the asymptotic expansion of the scalar field. The anti-de Sitter charges are found to involve a scalar field contribution. Subtleties associated with the self-interactions of the scalar field as well as its gravitational back reaction, not discussed in previous treatments, are explicitly analyzed. In particular, it is shown that the fields develop extra logarithmic branches for specific values of the scalar field mass (in addition to the known logarithmic branch at the B-F bound).     

A Novel Method for Analysis of Xanthate Group Distribution in Viscoses

Analytical monitoring of xanthation in the viscose process along with xanthate group analysis in the viscose material is a long-debated problem in cellulose chemistry. The task is rendered extremely intricate by the lability of the starting material and the harshness of the reaction medium, which adds to a lack of suitable analytical approaches. In a four-years' endeavor in our lab, a method is being developed which allows to analyze the distribution of xanthate groups in viscoses relative to the anhydroglucose units and along the cellulose chain. In a first step the xanthate groups are stabilized by alkylation, which was optimized towards quantitative conversion. In a second step, the remaining free hydroxyl groups are protected by carbanilation, followed by selective removal of the stabilized xanthate groups. Steps two and three thus generate an inverse image of the initial xanthate pattern. In the forth and fifth step, the liberated hydroxyl groups are methylated, and the carbanilates are removed, so that in the overall process the xanthates were replaced by methyl groups. All reaction steps have been comprehensively tested with regard to completeness of conversion and orthogonality of the protecting groups.