Copper-induced oligomerization of peptides: a model study

In this work, copper-binding of the tetraglycine peptide (Gly-Gly-Gly-Gly) was studied by electrospray ionization mass spectrometry. Experiments were performed under alkaline conditions, in the presence of ethanolamine (pH 10.95). We observed that the presence of copper(II) ions induces the aggregation of the peptide and the formation of copper-bound complexes with higher molecular mass is favored, such as the oligomer complexes [3M+2Cu-3H](+) and [4M+3Cu-5H](+). At 1:1 peptide-copper(II) ion ratio, the singly charged [3M+2Cu-3H](+) oligomer complex is the base peak in the mass spectrum. Metal ion-induced oligomer-ization of neurotoxic peptides is well known in the literature; however, there are very few examples in which such oligomerization was directly observed by mass spectrometry. Our results show that application of short peptides can be useful to study the -mechanism of metal ion binding and metal ion-induced oligomerization of peptides.     

Liquid phase microextraction strategies combined with total reflection X-ray spectrometry for the determination of low amounts of inorganic antimony species in waters

In the present study, and taking into account the microanalytical capability of total reflection X-ray spectrometry (TXRF), we explored the possibilities of hollow fibre liquid-phase microextraction (HF-LPME) and dispersive liquid–liquid microextraction (DLLME) combined with TXRF for the determination of low amounts of inorganic Sb species in waters.     

Unravelling the detailed microstructure of a semiconducting (quasi‐metal) soluble polymer incorporating conjugated thienylene methine sequences

This article reports a thorough spectroscopic characterization and the complete microstructural unravelling of a novel soluble poly(thienylene methylene) recently obtained by a straightforward process based on the methanesulfonic acid‐catalyzed self‐condensation of 2‐acetoxymethyl‐3,4‐dimethylthiophene. These macromolecules were found to generate both in situ (in the acidic reaction medium) and ex situ (by the addition of appropriate dopants) conjugated sequences consisting of alternating aromatic‐ and quinoid‐like thiophene rings, that is, conjugated thienylene methine sequences. The effect of different types of dopants on the electronic features of these polymers was assessed by the extent of bathochromic shifts they induced in the macromolecule UV–vis spectra. Doped films obtained by solution casting were characterized by dielectric spectroscopy to evaluate their electronic conductivity. The observed low values of conductivity were explained on microscopic basis evidencing the presence of polymer branching. All the structures arising from side reactions responsible for branching were determined by an exhaustive NMR study, which led to the formulation of the corresponding mechanisms. Remarkably, all these polymers, irrespective of their specific structural features and molecular weights, retained complete solubility in common solvents. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Delta2D and Proteomweaver: Performance evaluation of two different approaches for 2‐DE analysis

2‐DE is a fundamental technology used in proteomics research. However, despite its high capacity to simultaneously separate several proteins for subsequent identification and quantitative comparison studies, a drawback for this technique is its limited reproducibility, especially when comparing data from different laboratories. 2‐DE‐related variability can be broadly divided into two categories: experimental and post‐experimental. Experimental variability depends on physical and chemical parameters, whereas post‐experimental variability arises when gels are analyzed by different software packages, particularly when different workflows are followed. In this paper, we compared the analysis performance of two software packages, Delta2D and Proteomweaver, using both standard and experimental gel images. Using standard gel images, the false negative spot count was 50% lower, the false positive count was 77% lower, the true positive count was 19% higher and spot matching was 4% higher in Delta2D when compared to Proteomeweaver. Using experimental gel images, we found that the total amount of time taken to complete the analysis with Delta2D was 30% that of the time needed with Proteomweaver and required fewer user interventions. The differences between ease of use and workflow strategy of these programs is discussed.     

Morphology and thermal properties relationship in poly(p-dioxanone)/layered double hydroxides nanocomposites

Nanocomposites of poly(p-dioxanone) (PPDO) with unmodified and organically modified layered double hydroxide (LDH) have been prepared by melt extrusion method. Dodecyl sulfate was used as organic modifier. The morphology of nanocomposites was analyzed by X-ray diffraction and transmission electron microscopy and their thermal properties by differential scanning calorimetry and thermogravimetric analysis. It has been found that the organic modifier decisively influences the nanocomposite morphology, resulting in a higher level of exfoliation. In addition, the glass transition temperature of nanocomposites was slightly higher than in case of unfilled PPDO. Moreover, the crystallization was delayed by LDH incorporation. The above behavior was ascribed to interactions between carbonyl groups of polymer matrix and hydroxyl groups of LDH, as supported by Fourier transformed infrared analysis. Interestingly, two different crystallization processes have been observed in the nanocomposite of PPDO and organically modified LDH. Unmodified and organo-modified LDH, practically did not alter the final melting point of PPDO. However, the thermal decomposition behavior was clearly influenced by the morphology exhibited by nanocomposites.