Antibody-free reading of the histone code using a simple chemical sensor array

The histone code refers to the complex network of histone post-translational modifications that control gene expression and are of high interest as drivers of a large number of human diseases. We report here on a mix-and-match toolkit of readily available dyes and calixarene host molecules that can be combined to form dye-displacement sensors that respond to a wide variety of cationic peptides. Using the data from only two or three such simple supramolecular sensors as a chemical sensor array produces fingerprints of data that discriminate robustly among many kinds of histone code elements. "Reads" that are accomplished include the discrimination of unmethylated, mono-, di-, and trimethylated lysines on a single histone tail sequence, identification of different modifications and combinations of modifications on a single histone tail sequence, identification of a single modification type in several different sequence contexts, and identification of isomeric dimethylarginine modifications. Reads that are sometimes troublesome for antibodies are achieved. We also report on the ability of the sensor array to report simultaneously on the concentrations and identities of histone modifications. This sensor array discriminates between post-translationally modified analytes without being limited to partners that contain a single, programmed binding interaction.     

Synthesis design and structure of a multipore zeolite with interconnected 12- and 10-MR channels

A new molecular sieve, ITQ-38, containing interconnected large and medium pores in its structure has been synthesized. The rational combination of dicationic piperidine-derivative molecules as organic structure directing agents (OSDAs) with germanium and boron atoms in alkaline media has allowed the synthesis of ITQ-38 zeolite. High-resolution transmission electron microscopy (HRTEM) has been used to elucidate the framework topology of ITQ-38, revealing the presence of domains of perfect ITQ-38 crystals as well as very small areas containing nanosized ITQ-38/ITQ-22 intergrowths. The structure of ITQ-38 is highly related to ITQ-22 and the recently described polymorph C of ITQ-39 zeolite. It shares a common building layer with ITQ-22 and contains the same building unit as the polymorph C of ITQ-39. All three structures present similar framework density, 16.1 T atoms/1000 ?(3).     

Uncertainty estimation of anions and cations measured by ion chromatography in fine urban ambient particles (PM2.5)

The present work presents a measurement uncertainty evaluation according to Guide to the Expression of Uncertainty in Measurement (GUM) of the concentration of the cations K⁺ and Li⁺ and anions NO₃⁻² and SO₄⁻² in fine airborne particulate matter, refers to particles less than 2.5 μm in diameter (PM_2.5), as measured by ion chromatography (US-EPA 300 method). The GUM method is not typically used to report uncertainty. In general, the analytical results only report the measurement’s standard deviation under repetition as an uncertainty; thus, not all sources of uncertainty are considered. In this work, the major sources of uncertainty regarding the measurements were identified as contributions to linear least square regression lines, repeatability, precision, and trueness. The expanded uncertainty was approximately 20% for anions and cations. The largest contribution to uncertainty was found to be repeatability.     

Rovibrational dynamics of the RbCs molecule in static electric fields. Classical study

We study the classical dynamics of the RbCs molecule in the presence of a static electric field. Under the Born–Oppenheimer approximation, we perform a rovibrational investigation which includes the interaction of the field with the molecular polarizability. The stability of the equilibrium points and the phase space structure of the system are explored in detail. We find that, for strong electric fields or for energies close to the dissociation threshold, the molecular polarizability causes relevant effects on the system dynamics.     

On weak*-extensible Banach spaces

We study the stability properties of the class of weak*-extensible spaces introduced by Wang, Zhao, and Qiang showing, among other things, that weak*-extensibility is equivalent to having a weak*-sequentially continuous dual ball (in short, w*SC) for duals of separable spaces or twisted sums of w*SC spaces. This shows that weak*-extensibility is not a 3$3$-space property, solving a question posed by Wang, Zhao, and Qiang. We also introduce a restricted form of weak*-extensibility, called separable weak*-extensibility, and show that separably weak*-extensible Banach spaces have the Gelfand–Phillips property, although they are not necessarily w*SC spaces.     

A proof by calibration of an isoperimetric inequality in the Heisenberg group {\mathbb{H}^n}

Let D be a closed disk centered at the origin in the horizontal hyperplane {t?=?0} of the sub-Riemannian Heisenberg group ${\mathbb{H}^n}$ , and C the vertical cylinder over D. We prove that the perimeter of any set E such that ${D\subset E\subset C}$ is larger than or equal to the one of the rotationally symmetric sphere with constant mean curvature of the same volume, and that equality holds only for these spheres using a recent result by Monti and Vittone (Math Z 1–17, 2010).     

Improved hydrothermal synthesis of MoS2 sheathed carbon nanotubes

MoS₂ sheathed carbon nanotubes have been successfully synthesized using a hydrothermal route under controlled conditions. The resultant material was studied by XRD, EDS, HRTEM, and Raman spectroscopy. Advantages of the preparation presented here compared to other methods are: a) lower reaction temperature, b) high yield of sheathed nanotubes including ends and full body, c) simple process with non-toxic materials, and d) no damage inflicted to nanotubes.     

Plants as sources of new antimicrobials and resistance-modifying agents

Covering: up to November 2011Infections caused by multidrug-resistant bacteria are an increasing problem due to the emergence and propagation of microbial drug resistance and the lack of development of new antimicrobials. Traditional methods of antibiotic discovery have failed to keep pace with the evolution of resistance. Therefore, new strategies to control bacterial infections are highly desirable. Plant secondary metabolites (phytochemicals) have already demonstrated their potential as antibacterials when used alone and as synergists or potentiators of other antibacterial agents. The use of phytochemical products and plant extracts as resistance-modifying agents (RMAs) represents an increasingly active research topic. Phytochemicals frequently act through different mechanisms than conventional antibiotics and could, therefore be of use in the treatment of resistant bacteria. The therapeutic utility of these products, however, remains to be clinically proven. The aim of this article is to review the advances in in vitro and in vivo studies on the potential chemotherapeutic value of phytochemical products and plant extracts as RMAs to restore the efficacy of antibiotics against resistant pathogenic bacteria. The mode of action of RMAs on the potentiation of antibiotics is also described.     

Physicochemical characteristics of protein-NP bioconjugates: the role of particle curvature and solution conditions on human serum albumin conformation and fibrillogenesis inhibition

Gold nanoparticles (Au NPs) from 5 to 100 nm in size synthesized with HAuCl(4) and sodium citrate were complexed with the plasma protein human serum albumin (HSA). Size, surface charge, and surface plasmon bands of the Au NPs are largely modified by the formation of a protein corona via electrostatic interactions and hydrogen bonding as revealed by thermodynamic data. Negative values of the entropy of binding suggested a restriction in the biomolecule mobility upon adsorption. The structure of the adsorbed protein molecules is slightly affected by the interaction with the metal surface, but this effect is enhanced as the NP curvature decreases. Also, it is observed that the protein molecules adsorbed onto the NP surface are more resistant to complete thermal denaturation than free protein ones as deduced from the increases in the melting temperature of the adsorbed protein. Differences in the conformations of the adsorbed protein molecules onto small (<40 nm) and large NPs were observed on the basis of ζ-potential data and FTIR spectroscopy, also suggesting a better resistance of adsorbed protein molecules to thermal denaturing conditions. We think this enhanced protein stability is responsible for a reduced formation of HSA amyloid-like fibrils in the presence of small Au NPs under HSA fibrillation conditions.