Evaluation of Candidatus Liberibacter Asiaticus Efflux Pump Inhibition by Antimicrobial Peptides

Citrus greening, also known as Huanglongbing (HLB), is caused by the unculturable bacterium Candidatus Liberibacter spp. (e.g., CLas), and has caused a devastating decline in citrus production in many areas of the world. As of yet, there are no definitive treatments for controlling the disease. Antimicrobial peptides (AMPs) that have the potential to block secretion-dependent effector proteins at the outer-membrane domains were screened in silico. Predictions of drug-receptor interactions were built using multiple in silico techniques, including molecular docking analysis, molecular dynamics, molecular mechanics generalized Born surface area analysis, and principal component analysis. The efflux pump TolC of the Type 1 secretion system interacted with natural bacteriocin plantaricin JLA-9, blocking the β barrel. The trajectory-based principal component analysis revealed the possible binding mechanism of the peptides. Furthermore, in vitro assays using two closely related culturable surrogates of CLas (Liberibacter crescens and Rhizobium spp.) showed that Plantaricin JLA-9 and two other screened AMPs inhibited bacterial growth and caused mortality. The findings contribute to designing effective therapies to manage plant diseases associated with Candidatus Liberibacter spp.     

Synthesis and Characterization of Rare Earth Orthovanadate (RVO4; R = La, Ce, Nd, Sm, Eu & Gd) Nanorods/Nanocrystals/Nanospindles by a Facile Sonochemical Method and Their Catalytic Properties

We report herein on an efficient sonochemical method for the synthesis of rare earth orthovanadate nanorods/nanoparticles/nanospindles, (general formula RVO₄; R = La, Ce, Nd, Sm, Eu and Gd). TGA, XRD, FTIR, Raman, UV–Vis, and TEM studies are employed for their characterization and for understanding their morphologies. In order to vary the textural properties of the rare earth vanadates, two surfactants, polyethylene glycol (PEG) and amphiphilic triblock copolymer Pluronic P123, are chosen in the preparation. While the sonochemical synthesis in the presence of PEG results in the formation of nearly spherical nanoparticles of LaVO₄, CeVO₄, SmVO₄ and EuVO₄, the same technique yields nanorods and nanospindles of NdVO₄ and GdVO₄, respectively. When P123 is used as the surfactant, the morphologies of RVO₄ are strikingly different, and in most cases nanorods and nanospindles are formed. The photocatalytic activities of the rare earth orthovanadate have been evaluated by studying the degradation of methylene blue, and CeVO₄ seems to be the best catalyst in the heterogeneous photolysis. The electrocatalytic activity of the vanadates has been examined by studying the hydrogen evolution reaction using a linear sweep voltammogram technique in 1 M of a H₂SO₄ solution. GdVO₄ seems to be the best electrocatalyst. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Catalytic Induced Thermal Conversion of Amorphous Carbon into Single Walled Carbon Nanotubes

Single walled carbon nanotubes (SWNTs) have caught extensive attention in the field of material science and electronics. Their formation typically uses plasma arc or CVD techniques [1–3]. So far, formation of SWCNTs just by thermal conversion of amorphous, non graphitic carbon which is a nearly ubiquitous carbon source is challenging but has not been reported so far. We herein demonstrate the catalytic growth of SWNTs from an amorphous carbon source (activated charcoal powder, ‘Aktivkohle’) mediated by three different catalytically active metals; metallic nickel, nickel derived from bis(η⁵‐cyclopentadienyl)nickel (nickelocene) and yttrium formed in situ from yttrium oxide.     

E−Z Isomerization in Guanidine: Second-order Saddle Dynamics,Non-statisticality,and Time-frequency Analysis

Our recent work on the E−Z isomerization reaction of guanidine using ab initio chemical dynamics simulations [Rashmi et al., Regul. Chaotic Dyn. 2021 , 26, 119] emphasized the role of second-order saddle ( SOS ) in the isomerization reaction; however, we could not unequivocally establish the non-statistical nature of the dynamics followed in the reaction. In the present study, we performed thousands of on-the-fly trajectories using forces computed at the MNDO level to investigate the influence of second-order saddle in the E−Z isomerization reaction of guanidine and the role of intramolecular vibrational energy redistribution (IVR) on the reaction dynamics. The simulations reveal that while majority of the trajectories follow the traditional transition state pathways, 15 % of the trajectories follow the SOS path. The dynamics was found to be highly non-statistical with the survival probabilities of the reactants showing large deviations from those obtained within the RRKM assumptions. In addition, a detailed analysis of the dynamics using time-dependent frequencies and the frequency ratio spaces reveal the existence of multiple resonance junctions that indicate the existence of regular dynamics and long-lived quasi-periodic trajectories in the phase space associated with non-RRKM behavior.     

Synthesis,characterization, biological evaluation and molecular docking studies of 2-(1H-benzo[d]imidazol-2-ylthio)-<Emphasis Type="Italic">N</Emphasis>-(substituted 4-oxothiazolidin-3-yl) acetamides

Background

A series of 2-(1H-benzo[d]imidazol-2-ylthio)-N-(substituted 4-oxothiazolidin-3-yl) acetamides was synthesized and characterized by physicochemical and spectral means. The synthesized compounds were evaluated for their in vitro antimicrobial activity against Staphylococcus aureus, Bacillus subtilis, Escherichia coli, Candida albicans and Aspergillus niger by tube dilution method. The in vitro cytotoxicity study of the compounds was carried out against human colorectal (HCT116) cell line. The most promising anticancer derivatives (5l, 5k, 5i and 5p) were further docked to study their binding efficacy to the active site of the cyclin-dependent kinase-8.

Results

All the compounds possessed significant antimicrobial activity with MIC in the range of 0.007 and 0.061 µM/ml. The cytotoxicity study revealed that almost all the derivatives were potent in inhibiting the growth of HCT116 cell line in comparison to the standard drug 5-fluorouracil. Compounds 5l and 5k (IC₅₀ = 0.00005 and 0.00012 µM/ml, respectively) were highly cytotoxic towards HCT116 cell line in comparison to 5-fluorouracil (IC₅₀ = 0.00615 µM/ml) taken as standard drug.

Conclusion

The molecular docking studies of potent anticancer compounds 5l, 5k, 5i and 5p showed their putative binding mode and significant interactions with cyclin-dependent kinase-8 as prospective agents for treating colon cancer.

     

EPR of gamma-irradiated single crystals of 2-amino-5-nitro pyridinium L-tartrate: a NLO material

Single crystals of a non-linear optical (NLO) material 2-amino-5-nitropyridinum L-tartrate (ANPLT) were grown by solvent evaporation technique and characterized by the measurement of density, FT-IR, FT-Raman and X-ray diffraction techniques. Microhardness study and SHG test were also carried out. The EPR spectra were recorded for gamma-irradiated single crystal of ANPLT. The angular variation studies of the spectra were carried out and the principal values of g- and A-tensors were determined. The site symmetry of the radical formed is axial.     

EPR investigations on γ-irradiated 4-hydroxyacetophenone single crystals: an NLO material

The single crystals of 4-hydroxyacetophenone (4HAP) were grown by the solution growth technique and characterized by X-ray diffraction, UV–VIS, FT-IR, and FT-Raman techniques. TGA–DTA analyses have also been carried out. Electron paramagnetic resonance spectra of γ-irradiated 4HAP were recorded and the spin Hamiltonian parameters were evaluated.     

Tracing the pathogen Staphylococcus aureus on laboratory ants using physical preconcentration coupled ZnO nanoparticle assisted MALDI-TOF MS

Ants and humans coexist closely and for the most part happily. We consider ants to be harmless, small beings--we have no problem picking them out of our tea cups or sugar jars, throwing them away and continuing to consume the food. This paper is an eye-opener that these ants are not as harmless as they may seem. In particular, our relationship with those present in bacteria-rich environments (e.g. a microbiological lab) need to be reconsidered. From an analytical point of view we have applied the physical preconcentration coupled ZnO NPs assisted MALDI-MS (PP-MALDI-MS) as a novel and sensitive technique for detecting bacteria on the surface of a species of ant present in our laboratory. The preconcentration methods consist of simple techniques comprising of vortex combined with centrifugation or ultrasonication resulting in increasing sample concentration up to the MALDI-MS detection limit. ZnO NPs were used to further enhance the bacterial signals for culture free rapid analysis using MALDI-MS. The importance of a vortex-combined centrifugation approach, using a large number of samples (large number of ants) and decreasing the suspension volume and addition of sample to ZnO NPs (3.5g L(-1)) were found to be crucial prerequisites for increasing MALDI-MS detection of bacteria on ants. We were able to identify the pathogenic clinically important Staphylococcus aureus on the surface of the ants. The bacterial identification was validated using ClinPro 2.1.     

Discovery of Novel Sulfonamide‐Based 5‐Arylidenerhodanines as Effective Carbonic Anhydrase (II) Inhibitors: Microwave‐Assisted and Ultrasound‐Assisted One‐Pot Four‐Component Synthesis,Molecular Docking,and Anti‐CA II Screening Studies

The synthesis of N‐substituted‐5‐arylidenerhodanines was carried out by the optimized one‐pot sequential four‐component procedure with the condensation between 4‐aminobenzenesulfonamide, suitable aldehyde, ethyl bromoacetate, and carbon disulfide. In addition to traditional method, microwave‐irradiated and ultrasound‐irradiated techniques were implemented in water at ambitious conditions, and the target compounds were obtained in high yields and purity without purification methods. The enzyme inhibition activity of newly synthesized compounds on carbonic anhydrase (II) was also evaluated. The reference inhibitor molecule was sulfanilamide, the IC₅₀ value of which was 3.5 μM. It was also found that the IC₅₀ values of all examined molecules were in nanomolar level and much smaller than those of sulfanilamide. The inhibition between 93.5 and 99.6% was observed in the presence of new compounds synthesized in the present study at the accessible maximum concentration in the reaction mixtures. 5j , among the tested compounds possessing the lowest IC₅₀ value, was found to be the most potent carbonic anhydrase (II) inhibitor.