Exploring the structure,binding mode,flexibility and toxicity nature for Sinefungin molecule: a theoretical approach

Sinefungin (SFN) is an antiviral agent of dengue (DENV) and Zika (ZIKV) viruses with IC₅₀ values of 0.63 and 1.18 µM, respectively. The ADMET properties of SFN revealed that the SFN molecule can be used as an oral drug due to its good solubility nature. The molecular docking analysis of SFN molecule with RNA capping site of DENV and ZIKV NS5 MTase was performed. From this, the SFN-DENV MTase was found to be the best, based on binding energy (??7.56 kcal/mol) and intermolecular interactions. The geometrical parameters of the optimized conformation and docked conformations of SFN molecule are compared which indicated that the intermolecular interactions lead to the modifications of SFN conformation in active site. The molecular electrostatic potential map of SFN depicts the possible nucleophilic and electrophilic locations present in the molecule. The HOMO–LUMO based electronic properties such as electron affinity (A), electrophilicity (ω), electronegativity (χ) and global hardness (η) were calculated to determine the stability and toxicity of SFN molecule. Fukui function and NBO analysis of SFN were also computed.

     

Kinetics of polymerization of N,N-methylenebisacrylamide initiated by KMnO4-H2C2O4 redox system

A kinetic study of the gel free polymerization of the divinyl monomer N,N′-methylenebisacrylamide has been made using permanganate-oxalic acid system as redox initiator; R_p is proportional to [monomer]², [KMnO₄] and [H₂C₂O₄]⁰. A cyclopolymerization mechanism is proposed. A complex between monomer and Mn³⁺ participates, in addition to the complex [Mn(HC₂O₄)₂]⁺.     

Optical sensor for the visual detection of mercury using mesoporous silica anchoring porphyrin moiety

A low cost, solid optical sensor for the rapid detection of low concentrations of Hg2+ in aqueous media was prepared by the monolayer functionalization of mesoporous silica with 5,10,15,20-tetraphenylporphinetetrasulfonic acid (TPPS), anchored by N-trimethoxysilylpropyl-N,N,N-trimethylammonium chloride (TMAC). The detection is based on the color change of TPPS from orange to green as a result of the formation of a charge-transfer complex with Hg2+. The intensity of the charge-transfer band varies linearly with Hg2+ in the concentration range from zero to 2.5 x 10(-7) mol dm(-3). The lower detection limit observed for Hg2+ concentration is 1.75 x 10(-8) mol dm(-3). The material exhibits good chemical and mechanical stability, and did not show any degradation of TPPS for a period of eight months. The sensor was applied for the analysis of various environmental samples. The effects of pH, sample volume, reaction time, amount of material, and the presence of foreign ions on the detection method are discussed.     

Kinetics of Cyclopolymerization of N,N′-Methylenebisacrylamide Initiated by Redox Couples with Mn(III). Part III

Redox-initiated free-radical cyclopolymerization of the nonconjugated divinyl monomer N,N′-methylenebisacrylamide was studied at 25–40°C, involving trisacetatomanganese(III) dihydrate as oxidant with four different reductants, methyl ethyl ketone (2-butanone), cyanoacetic acid, malic acid, and thiomalic acid. While the general mechanistic sequence is the same, the modes of termination are different in these cases. Because the reactivities of the different free radicals from the four redox pairs are different, the kinetic order with respect to the monomer, oxidant, and reductant differ considerably in magnitude. The kinetic and thermodynamic parameters were calculated.     

Synthesis and structure‐property relationship of new donor–acceptor‐type conjugated monomers and polymers on the basis of thiophene and benzothiadiazole

We have synthesized three new donor–acceptor‐type monomers to achieve soluble and processable low‐band gap polymers, 4,7‐bis(4‐octyl‐2‐thienyl)‐2,1,3‐benzothiadiazole (B4TB), 4,7‐bis(3‐octyl‐2‐thienyl)‐2,1,3‐benzothiadiazole (B3TB), and 4‐(3‐octyl‐2‐thienyl)‐7‐(4‐octyl‐2‐thienyl)‐2,1,3‐benzothiadiazole (B34TB), by the Suzuki coupling reaction. Using B4TB and B3TB, two soluble high molecular weight regioregular head‐to‐head and tail‐to‐tail polymers poly[4,7‐bis(4‐octyl‐2‐thienyl)‐2,1,3‐ benzothiadiazole] (PB4TB) and poly[4,7‐bis(3‐octyl‐2‐thienyl)‐2,1,3‐benzothiadiazole] (PB3TB) were prepared via iron(III) chloride‐mediated oxidative polymerization. The structures of the polymers were confirmed by ¹H and ¹³C NMR, and the molecular weights were determined by size exclusion chromatography. The optical properties (absorbance and fluorescence) of the monomers and polymers were studied and compared with unsubstituted analogues. The monomers and polymers bearing octyl substituents on the thiophene rings pointing away from the benzothiadiazole units (B4TB and PB4TB) possess a more planar structure, and their optical spectra appear redshifted as compared with those having the octyl chain nearer to the benzothiadiazole (B3TB and PB3TB). The optical band gaps of PB3BT (E_g = 2.01 eV) and PB4BT (E_g = 1.96 eV), however, are at much higher energy levels than that of the unsubstituted electrochemically polymerized PBTB material (E_g = 1.1–1.2 eV) as a result of steric effects of the octyl chains. The electrochemical properties of the monomers and polymers were examined using cyclic voltammetry and reflect the effect of alkyl substitution. B4TB and PB4TB were oxidized at a lower potential than B3TB and PB3TB, whereas their reduction potentials were less negative. The electrochemical band gap calculated from the onset of the reduction and oxidation process agreed with the optical band gap calculated from the absorption edges. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 40: 251–261, 2002     

Melt polycondensation approach for reduction degradable helical polyester based on l‐cystine

Melt polycondensation approach is developed for new classes of reduction responsive disulfide containing functional polyesters based on l ‐cystine amino acid resources under solvent free process. l ‐Cystine was converted into multi‐functional ester‐urethane monomer and subjected to thermoselective transesterification at 120 °C with commercial diols in the presence of Ti(OBu)₄ to produce polyesters with urethane side chains. The polymers were produced in moderate to high molecular weights and the polymers were found to be thermally stable up to 250 °C. The β‐sheet hydrogen bonding interaction among the side chain urethane unit facilitated the self‐assembly of the polyester into amyloid‐like fibrils. The deprotection of urethane unit into amine functionality modified the polymers into water soluble cationic polyester spherical nanoparticles. The reduction degradation of disulfide bond was studied using DTT as a reducing agent and the high molecular weight polymers chains were found be chopped into low molecular weight oligomers. The cytotoxicity of cationic disulfide nanoparticle was studied in MCF‐7 cells and they were found to be biocompatible and non‐toxic to cells upto 50 μg/mL. The custom designed reduction degradable and highly biocompatible disulfide polyesters from l ‐cystine are useful for futuristic biomedical applications. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 2864–2875     

Effect of cyclodextrin complexation in bromine addition to unsymmetrical olefins: evidence for participation of cyclodextrin hydroxyl groups

Multiple recognition by cyclodextrin in a bimolecular reaction, namely bromination of styrene, methyl cinnamate, phenylacetylene and allylbenzene, has been studied. Bromohydrin is obtained as a major product along with dibromide in the bromination of styrene and methyl cinnamate. The percentage of bromohydrin decreases as the cavity size increases. With phenylacetylene, bromophenylacetylene and phenacyl bromide are obtained in addition to the dibromides. In the bromination of cyclodextrin complexes of allylbenzene, the product distribution is the same as in solution bromination. The observed results demonstrate the efficiency of cyclodextrin in stabilizing the open carbocationic intermediate and thus provide chemical evidence for the participation of cyclodextrin hydroxyl groups.